Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3089g00027 ATGCCATTTAGATTATCCCTGCATCACACATCCTCGGCTATGGCGGCATGTCAATACACTAAACGTATTCATCTACTTCCTTATTTGGAGATAACCATAATAATTTTGTCTTTCATAATTCCACAGGCATCTCTATTAGACTTCAGCTATCAGCAATTTCTCAACAAGTATGATACCTTAAATTTTGAAGGAGATGTTTATCATGACAAGGGATTCCTCCAACTCACCAAGTATGAGAAAGACAGTGTTGGCAGAGTCACATATTACAAACAGCTTCATCTTTGGGATAAGGAATCAAGAAAACTCACAGACTTCACTTCCAATTTCTCCTTCATTATCAATGCACCAAACAAAACCAGCCTTGGAGATGGCATCACATTCTTCCTTGCCAGCCCCAACTTTCCACTTCCTGTCCCACCAGATGGAACTGGTATTGGCCTTGTGAGCCGTCAACAAATGCAAGATCCAAATTACCCTAATCAGCATCCATTTGTAGCAGTGGAGTTTGACACCTTTTGGAATAAATTTGATCCTCAATATGACCATGTAGGTGTCGATATTAAAACCGTGAGAAGTCCTTTCACTGCAGAATGGTTTAGTATTAAGGATGGTAGAGTATATGATGCCCAAATTAGCTATAATTCTTCTTCACACAATTTAAGTGTTATCTTCACAGGATATAAGGGTAATATCTCAGTCAAGCAAGACTACTATCACGTAGTTGACTTGAGACAGGTTCTACCGGATTGGGTTGAGTTTGGCTTCTCTTCAGCAACAGGATTGTTATATGAAATACATACACTTTGCTCATGGTCTTTTAGTTCGAATTTGGACTTGGAAGTGCATAAGGATGAAAGCAAGAAGAGGCTGGTGATTGGGCTGTGTATTGGTTCAGCTGTTTTAATTGTTGGTTTGGGATTAGCTTGGCTTATGATGTTGAAAATGAGAAGAGGCAAGGAAGATGGCGTGGAACTTACTATGGACGATGATTTTGAAAGGGGGACTGGACCTAAGAAATTTTCCTATGATGAACTTGTTAGAGCAACTAACAACTTTGCAGAGGAACAGAAGCTCGGACAAGGAGGTTTTGGTGGAGTCTACAAAGGATTTATAAGAGAGTTAGATGACTATGTTGCAGTTAAAAGGGTTTCACGGGGATCTAGACAGGGTGTGAAAGAGTATGCATCTGAAGTTAAGATCATTAGTCAACTTAGGCACAGGAATTTGGTGCAGCTCCTTGGATGGTGCCACAAGAAAAATGATCTTCTACTTGTCTATGAGTTCATGTCAAATGGAAGCCTAGATTCCCATCTTTTTGGAGGCAAAAATCTCCTAACATGGGCAGCAAGGTATCACATTGCTGCAGGCCTAGCATCAGCATTATTGTACCTACATGAAGAATGGGAGCAATGTGTGATTCATAGGGACATCAAATCAAGTAATGTTATGTTGGATTCAAATTTCAATACAAAGCTTGGAGACTTTGGATTAGCCAGGCTGGTAGATCATGAGAAAGGGTCACAAACAACAATTTTAGCTGGAACATTAGGATATATGGCCCCTGAATCTGCTACAAGAGGCAAAGCTAGTAGAGAATCCGATGTATACAGTTTTGGTGTTGTTGCTTTGGAGATAGCCTGTGGAAGAAAACCAATTGAACTAAAAGCCAGGGAAGAACAAATCCTTATGGTGGAATGGGTTTGGGAACTCTATGGCATGGGTAATCTACTAGAAGCAGCTGATCCAAGATTGTGTGGGGACTTTGACGAGCAAGAAATGGAAAGGTTAATGATAGTTGGCCTATGGTGTGCACACCCAGATTTTATTTTGAGGCCTACAATTAGGCAAGCAGTACATGTTCTTAACTTTGAAGCTCCATTGCCTAATCTCCCATCAAAGATGCCCAAACCCACCTTCATTGTTCCTTCTATTACTGCTCCTGCATCTTCAAGCACCCCATCATCTAATGTTAATGCTATTGAACTTACTCGAACCGACCCTTTATCTAGTAGCTCCAACACTTGCTTTTCACAATCCAACACATCTGCAGCACTTTTGCACACATATTAA 2070 0.4053 MPFRLSLHHTSSAMAACQYTKRIHLLPYLEITIIILSFIIPQASLLDFSYQQFLNKYDTLNFEGDVYHDKGFLQLTKYEKDSVGRVTYYKQLHLWDKESRKLTDFTSNFSFIINAPNKTSLGDGITFFLASPNFPLPVPPDGTGIGLVSRQQMQDPNYPNQHPFVAVEFDTFWNKFDPQYDHVGVDIKTVRSPFTAEWFSIKDGRVYDAQISYNSSSHNLSVIFTGYKGNISVKQDYYHVVDLRQVLPDWVEFGFSSATGLLYEIHTLCSWSFSSNLDLEVHKDESKKRLVIGLCIGSAVLIVGLGLAWLMMLKMRRGKEDGVELTMDDDFERGTGPKKFSYDELVRATNNFAEEQKLGQGGFGGVYKGFIRELDDYVAVKRVSRGSRQGVKEYASEVKIISQLRHRNLVQLLGWCHKKNDLLLVYEFMSNGSLDSHLFGGKNLLTWAARYHIAAGLASALLYLHEEWEQCVIHRDIKSSNVMLDSNFNTKLGDFGLARLVDHEKGSQTTILAGTLGYMAPESATRGKASRESDVYSFGVVALEIACGRKPIELKAREEQILMVEWVWELYGMGNLLEAADPRLCGDFDEQEMERLMIVGLWCAHPDFILRPTIRQAVHVLNFEAPLPNLPSKMPKPTFIVPSITAPASSSTPSSNVNAIELTRTDPLSSSSNTCFSQSNTSAALLHTY 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3089g00027 689 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524
Gabi3089g00027 689 Pfam Protein kinase domain 353 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3089g00027 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Gabi3089g00027 689 FunFam L-type lectin-domain containing receptor kinase IX.1 337 428 - -
Gabi3089g00027 689 ProSitePatterns Legume lectins alpha-chain signature. 247 256 IPR000985 -
Gabi3089g00027 689 Gene3D - 44 292 - -
Gabi3089g00027 689 ProSitePatterns Legume lectins beta-chain signature. 165 171 IPR019825 -
Gabi3089g00027 689 SMART serkin_6 352 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3089g00027 689 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Gabi3089g00027 689 PANTHER - 70 631 - -
Gabi3089g00027 689 CDD lectin_legume_LecRK_Arcelin_ConA 46 277 IPR001220 GO:0030246
Gabi3089g00027 689 FunFam Lectin-domain containing receptor kinase A4.3 429 641 - -
Gabi3089g00027 689 CDD STKc_IRAK 358 622 - -
Gabi3089g00027 689 SUPERFAMILY Concanavalin A-like lectins/glucanases 44 278 IPR013320 -
Gabi3089g00027 689 Gene3D Phosphorylase Kinase; domain 1 337 428 - -
Gabi3089g00027 689 Pfam Legume lectin domain 46 287 IPR001220 GO:0030246
Gabi3089g00027 689 ProSiteProfiles Protein kinase domain profile. 352 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3089g00027 689 Gene3D Transferase(Phosphotransferase) domain 1 429 642 - -
Gabi3089g00027 689 SUPERFAMILY Protein kinase-like (PK-like) 336 646 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3089g00027 Gabi-Chr3089 222051 224331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3089g00027 32 639 Receptor kinase-like Gene Family AT5G10530 46.445 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi3089g00027 Pkinase 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3089g00027 - - cam:101491058 815.453