Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3089g00013 ATGGGGAGAGGAAAGATTGCAATTCGAAGGATCGACAATTCCACTAGCCGGCAAGTAACATTTTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTAGAGAATTATCCATTCTCTGTGATGCAGAAGTTGGATTGATTGTGTTCTCCAGCACTAGCAAGCTTTATGACTATGCAAGCACTAGTATGAAATCTGTTATTGAGCGCTATAACAAGCTAAAGGAGGAACAACATCAGCAAATGAATCCAGCTTCAGAAGTTAAGTTTTGGCAGACAGAAGCAGCAAGCTTGAGACAACAACTCCAGTACTTACAAGAATGCCACAGGCAATTGATGGGTGAAGAACTGTCTGGTTTGGGTATTAAAGAACTGCAAAATCTGGAAAACCAACTGGAGATGAGTTTAAAGGGCATTCGCATAAAAAAGGTATTATGGCTCAATTCAAATCAGATCTCTTCCATTTAA 462 0.3961 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIVFSSTSKLYDYASTSMKSVIERYNKLKEEQHQQMNPASEVKFWQTEAASLRQQLQYLQECHRQLMGEELSGLGIKELQNLENQLEMSLKGIRIKKVLWLNSNQISSI 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3089g00013 153 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Gabi3089g00013 153 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Gabi3089g00013 153 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Gabi3089g00013 153 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 140 - -
Gabi3089g00013 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi3089g00013 153 ProSiteProfiles K-box domain profile. 86 153 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3089g00013 153 Coils Coil 120 140 - -
Gabi3089g00013 153 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Gabi3089g00013 153 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi3089g00013 153 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi3089g00013 153 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi3089g00013 153 Pfam K-box region 83 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3089g00013 153 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi3089g00013 153 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi3089g00013 153 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3089g00013 Gabi-Chr3089 159672 185643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3089g00013 1 141 MADS-box Gene Family AT4G37940 74.468 2.27e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi3089g00013 K-box 1.7e-18 No_clan