Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3089g00003 ATGGTAGTGTCACATAGAAGCAGTGGGGATCATAGTTGGTGGTGCAAATCCATTTCCCAAAAAGAAATGGAGAACTATGGATACCCATCATCGTACCCAGACTCAGGCGACTCTTCTCCGCGATCAAGAGAGATAGACTTCGAGAACACAGCTCCATCTCCAGTTCCATGGGAAGATCAACCACCAAACTACAAAGCCAAGTTCATGTGTAGCTACGGCGGCAAGATCCAGCCACGCACTCACGACAACCAACTCTCTTACGTCGGCGGCGAGACCAAGATCCTCGCCGTCGACCTAAACATCAAGTTCAGCGCCATGATCTCTAAACTTTCCGCCCTATGCAACGATGCTGACGTGTCCTTCAAGTACCAGCTCCCAGGCGAGGATCTTGACGCTCTCATCTCCGTCTCCAACGATGACGACCTTGACCACATGATGCACGAGTACGATCGTCTCTACCGTGCTTCCGCTAGACCCGCCCGCATGCGATTATTCCTCTTCACTAACGAAACTCTTAATTCGGCTCCTGCTTCTTCCCAACCCGACCCGGTTAAACCACCCGCCAACAACAACGTCGACTTTCTCTTCGGTCTAGACAAGGCCAACGCCGCTCCTCCGCCTCAGCCACCGCCAGCGACTGTGAAATTTCATGATCCAGTGCCGGAACTTCCTCGTGCCGCTCTGAGCCCTGCTGATCGGGTCGTTAGTTCGGATCCGAACATGAACCACCCGCTCGAGATTCAGAGACAGTTGCAGCGGTTGCAAGTTGTGGAGAACGAACAAGCTGCGTATCGGAGAAAAAGCGAAGACAACGTCGTCGGGAATTACCACGCCGGAGATTATTACGTTCACAAGCTACCTGAGAAATTGCCACCGTCTAATTTCCCGGCGAATGCGCCGCCGCCTCCCCAGGCAGGTTATTGGCCTGAAAAGCATGTTTCTGGCGAGGTTTATTCTCCGACGGTGTCAGCTGCTCCCGGAGGAGGGGACCAGCCGGTTTATGTAATTCCGGCGCCGGGAAGTTTCTATCATGCGCCGGTGATGCGTCCGCCGGCGGCACCGGCCACTCAAGGGTATTACACTGTTCAACGAATGCATTCTGATGCTTACCGTGAACCCCCGGTATACGGTGGCGCACCACCCCCTAAAGTGCCGTTCTCATCGGCGGTGCCGGCGCAACCGGTTAAAGCTCCTACGTATACAGAAGGATTCAGTGTAGTTCGCCCGGCTGGGATACCGGATAATACGGCCGCAGCGTACGCACATGTGGCGTACGATAGTGCAAGTGGGAGACAGGTTTACTACACTGCGCCGGGTGGCATGATGCACGCGCCGCCATACCAAGGAGTTGCTCCGCCCGTCAACGCTGATATGAGACAAGGTGGGGTGTCGTTGGGTCAGGAAGTTAAAATGATAAACAAGGTTTCTCAAGGTTCAGTGTGA 1443 0.5433 MVVSHRSSGDHSWWCKSISQKEMENYGYPSSYPDSGDSSPRSREIDFENTAPSPVPWEDQPPNYKAKFMCSYGGKIQPRTHDNQLSYVGGETKILAVDLNIKFSAMISKLSALCNDADVSFKYQLPGEDLDALISVSNDDDLDHMMHEYDRLYRASARPARMRLFLFTNETLNSAPASSQPDPVKPPANNNVDFLFGLDKANAAPPPQPPPATVKFHDPVPELPRAALSPADRVVSSDPNMNHPLEIQRQLQRLQVVENEQAAYRRKSEDNVVGNYHAGDYYVHKLPEKLPPSNFPANAPPPPQAGYWPEKHVSGEVYSPTVSAAPGGGDQPVYVIPAPGSFYHAPVMRPPAAPATQGYYTVQRMHSDAYREPPVYGGAPPPKVPFSSAVPAQPVKAPTYTEGFSVVRPAGIPDNTAAAYAHVAYDSASGRQVYYTAPGGMMHAPPYQGVAPPVNADMRQGGVSLGQEVKMINKVSQGSV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3089g00003 480 PANTHER OS05G0427100 PROTEIN-RELATED 32 352 - -
Gabi3089g00003 480 CDD PB1_UP2 69 167 - -
Gabi3089g00003 480 Gene3D - 86 169 - -
Gabi3089g00003 480 SMART PB1_new 80 169 IPR000270 GO:0005515
Gabi3089g00003 480 SUPERFAMILY CAD & PB1 domains 81 173 - -
Gabi3089g00003 480 MobiDBLite consensus disorder prediction 26 58 - -
Gabi3089g00003 480 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 85 169 - -
Gabi3089g00003 480 Coils Coil 247 267 - -
Gabi3089g00003 480 Pfam PB1 domain 81 167 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3089g00003 Gabi-Chr3089 42746 44414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3089g00003 59 217 MAP Kinase Kinase Kinase AT5G57610 38.365 8.58e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3089g00003 - - gmx:100780332 575.859