Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3086g00034 ATGGGGCAAGGGCAATCCAAAGGCGAGTTGCTCTACCAGCAAGTCAGTTATGGGAACTGCGAAGGAATCAAAGCCCTTCACAGAGAGGGTGCTGGCCTAGAGTGGATGGACAAAGAAGGAAAGACAGCCTTGATTGTTGCTTGCATGAATCCTGAGCTGTATAATGTTGCGAAAACTTTGATACAACTTGGAGCCAATGTCAATGCATACCGTCCTGGTCGTCATGCCGGGACTCCATTACATCATGCAGCTAAAAGGGGCCTTGAAAGTATGGTTAAGTTACTTCTTTTGCATGGAGCCAATCCTCTGATCTTGAATGATGATTGTCAAACTGCTCTTGAGGTTGCCAGGGCCAAAGGGCACAGCAATGTTGTTCGTGCACTTGAGAGTCATCTATGCTTGTTCTCTGGTTGGCTGCGGGAGTTTCATGGACCTGGGTTTCTAGAAGTTGTAGCTCCTCAGTTGGTATCAAGAAAAGTTTGGGCGGTTGTTTTACCAGTTGGTTCCAATGCCAGACCTTTCAAGTTGGAGCTTGCCATATATTCTACTTTGCAGGATGCACATCCACGTACAATTATTGCTCTGTGGAAGGCCAATTTAGAAGAACCAAAGTTTCACCAATCCGATGTGTCAGTGTCAATTGTTGATATTGCTACCAAAACACGCGTTAAACTTGGGCCTGCTAATCAGAATGACAAGCAACAACTTATGTGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGTATATCAAATGCTATGTACACTGATTCCAGCATTTTTGCATAATAATGTGGCTACAGTTCCACCCACAGCACCACCAACTGCTGAAGACCCAGAGTTGGCTATGGCTATCAATGCATCCATTCAGCATGCCCTTCAGGAGAGGCCACCCGTTCCTGATACCCAGCCAAACTTTGAAGCAAGCTCTTCAAGCAATGGAGAAAATGCAAGCAAGCATGGTTTTCTGGGTACACCAAATCCAAAGACAATGGATATTGAACCTGTACATGAAGCTGACCTAAGTGGCAATAGTCAGGATGTCCAAAGCCATGACAATGTCTCTGCTGGCCATACTGCTAGTGTTCTGGATTTAAATCCATCGGCTCCTCCAATTGCTGATGATATTCCAATAGATGGTCCCATTCATTATCCTTCAATTGATTTAAGCCCTGTTGATATATCATCTGCAGTTGTTGAGAAGCTTCGTAAAGAAGAAGAACAAAATGCCGGTGGAAGTGGTTCATCATGCGTGATATGTTTAGATGCTCCAGCAGAGGGGGCATGCATTCCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTCAAAACAAAGAAATGGGGTTGCCCAGTATGTCGTACTAAGATAGATCAGATCATAAAGCTATATCATGTTTGA 1407 0.4463 MGQGQSKGELLYQQVSYGNCEGIKALHREGAGLEWMDKEGKTALIVACMNPELYNVAKTLIQLGANVNAYRPGRHAGTPLHHAAKRGLESMVKLLLLHGANPLILNDDCQTALEVARAKGHSNVVRALESHLCLFSGWLREFHGPGFLEVVAPQLVSRKVWAVVLPVGSNARPFKLELAIYSTLQDAHPRTIIALWKANLEEPKFHQSDVSVSIVDIATKTRVKLGPANQNDKQQLMWFSNACKGIPQVYQMLCTLIPAFLHNNVATVPPTAPPTAEDPELAMAINASIQHALQERPPVPDTQPNFEASSSSNGENASKHGFLGTPNPKTMDIEPVHEADLSGNSQDVQSHDNVSAGHTASVLDLNPSAPPIADDIPIDGPIHYPSIDLSPVDISSAVVEKLRKEEEQNAGGSGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRTKIDQIIKLYHV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3086g00034 468 ProSiteProfiles Zinc finger RING-type profile. 417 456 IPR001841 -
Gabi3086g00034 468 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Gabi3086g00034 468 Gene3D - 3 78 IPR036770 -
Gabi3086g00034 468 Pfam Zinc finger, C3HC4 type (RING finger) 415 462 - -
Gabi3086g00034 468 SUPERFAMILY Ankyrin repeat 10 133 IPR036770 -
Gabi3086g00034 468 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Gabi3086g00034 468 SUPERFAMILY RING/U-box 416 462 - -
Gabi3086g00034 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 467 IPR013083 -
Gabi3086g00034 468 Gene3D - 79 132 IPR036770 -
Gabi3086g00034 468 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Gabi3086g00034 468 SMART ANK_2a 108 137 IPR002110 GO:0005515
Gabi3086g00034 468 SMART ANK_2a 75 104 IPR002110 GO:0005515
Gabi3086g00034 468 SMART ANK_2a 39 69 IPR002110 GO:0005515
Gabi3086g00034 468 CDD RING-HC_XBAT35-like 413 466 - -
Gabi3086g00034 468 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Gabi3086g00034 468 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Gabi3086g00034 468 PANTHER ROLLING PEBBLES, ISOFORM B 408 465 - -
Gabi3086g00034 468 MobiDBLite consensus disorder prediction 303 320 - -
Gabi3086g00034 468 MobiDBLite consensus disorder prediction 296 333 - -
Gabi3086g00034 468 SMART ring_2 417 455 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3086g00034 Gabi-Chr3086 309518 316272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3086g00034 409 465 C3H Transcription Factor Family AT3G06140 33.333 1.26e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3086g00034 - - lang:109354249 692.575