Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3086g00031 ATGGATAGTTGCTGGTTTAATAAGTTTAAGTCAAAGGAAAAAACACCAACTTCAAAAAACAAGGATATAGGCATTGCAAAAGAAGGGTCAAAACCCCCAACAAATGAAGAAGCACCTTCAAATGTGACCAAACAGAAGGTTGCAGCTGCAAAGCAGTACATAGAAAACCATTATAAGAAGCAGATGAAGGACCTGCAGGATAGAAAGGAACGACGTGATATGCTAGAAAAAAAGTTGGCAGATGCTGAAGTCTCTGAGGAAGAGCAGAACAACTTGCTCAAGTATTTTGAGAAAAAGGAGAGGGAATACATGCGCCTTCAAAGGCATAAGATGGGGGCTGATGATTTTGAGCCCCTGACCATGATAGGGAAGGGTGCTTTTGGAGAGGTCCGAATCTGTCGAGAGAAGGCAACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAACATGTAAAAGCTGAGAGGAACCTACTTGCAGAAGTTGACAGCAATTGCATTGTAAAGCTTTATTGTTCCTTTCAAGATGAAGAGTATTTATATCTCATAATGGAGTATCTACCTGGTGGTGATATGATGACATTGCTCATGCGGAAGGATATACTGACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCTATAGAGTCAATTCATAAACATAATTATATTCACAGAGATATCAAACCTGACAACTTGCTGCTAGATAGAAATGGTCATATGAAATTATCGGACTTTGGATTATGTAAGCCACTAGACTGCAGTAATCTTAATGAGAAGGACTTCTCTATTGGGAGCAACAGAAGTGGAGCCCTTCAGAGTGATGGACGTCCTGTGGCTCCTAAAAGAACTCAGCAGGAGCAACTGCAGCATTGGCAGAAAAATAGGCGAATGCTTGCCTATTCTACGGTTGGAACACCTGACTATATTGCCCCTGAAGTTCTACTGAAAAAAGGATATGGCATGGAATGTGACTGGTGGTCTCTGGGAGCTATAATGTATGAAATGCTAGTGGGATATCCACCCTTTTATTCAGATGAACCAATGTCGACGTGTAGAAAGATAGTAAATTGGAGAACTCATTTAAAATTTCCAGAAGAAGCTAAACTATCTGCAGAGACAAAGGATCTTATTAGTAGACTCCTATGTAATGTGGAGCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTATTGAATGGGACAAATTGTACCAAATGAAAGCTGCTTTTATTCCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGTGGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAGATGCTGTCATCTAAAGATGTTAACTTCGTTGGCTACACATATAAGAACTTTGAAATCGTGAATGATGATCAACTACCTGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAACGGCCATCTATTAAAACCCTATTTGATGACGAATCGGCTATGGCTACCGATCAACCTGTCCAAGGGAGCTTCATAAAACTCTGA 1593 0.408 MDSCWFNKFKSKEKTPTSKNKDIGIAKEGSKPPTNEEAPSNVTKQKVAAAKQYIENHYKKQMKDLQDRKERRDMLEKKLADAEVSEEEQNNLLKYFEKKEREYMRLQRHKMGADDFEPLTMIGKGAFGEVRICREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLNEKDFSIGSNRSGALQSDGRPVAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSAETKDLISRLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEEVDNQTQPSSKSGPWRKMLSSKDVNFVGYTYKNFEIVNDDQLPGIAELKKKSTKPKRPSIKTLFDDESAMATDQPVQGSFIKL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3086g00031 530 SMART serkin_6 116 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3086g00031 530 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Gabi3086g00031 530 SMART pkinase_C_6 416 480 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi3086g00031 530 FunFam Non-specific serine/threonine protein kinase 314 433 - -
Gabi3086g00031 530 MobiDBLite consensus disorder prediction 1 46 - -
Gabi3086g00031 530 MobiDBLite consensus disorder prediction 1 26 - -
Gabi3086g00031 530 ProSiteProfiles AGC-kinase C-terminal domain profile. 416 488 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi3086g00031 530 Pfam Protein kinase C terminal domain 434 478 IPR017892 GO:0004674|GO:0005524|GO:0006468
Gabi3086g00031 530 SUPERFAMILY Protein kinase-like (PK-like) 91 468 IPR011009 -
Gabi3086g00031 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Gabi3086g00031 530 Pfam Protein kinase domain 118 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3086g00031 530 ProSiteProfiles Protein kinase domain profile. 116 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3086g00031 530 Coils Coil 58 92 - -
Gabi3086g00031 530 CDD MobB_NDR_LATS-like 50 111 - -
Gabi3086g00031 530 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 467 - -
Gabi3086g00031 530 CDD STKc_NDR_like 114 479 - -
Gabi3086g00031 530 Gene3D Transferase(Phosphotransferase) domain 1 200 278 - -
Gabi3086g00031 530 Gene3D Transferase(Phosphotransferase) domain 1 307 435 - -
Gabi3086g00031 530 FunFam Non-specific serine/threonine protein kinase 200 267 - -
Gabi3086g00031 530 Gene3D Phosphorylase Kinase; domain 1 86 199 - -
Gabi3086g00031 530 MobiDBLite consensus disorder prediction 495 515 - -
Gabi3086g00031 530 FunFam Non-specific serine/threonine protein kinase 87 199 - -
Gabi3086g00031 530 MobiDBLite consensus disorder prediction 495 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3086g00031 Gabi-Chr3086 275936 284304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3086g00031 24 530 AGC Kinase Gene Family AT3G23310 85.265 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Gabi3086g00031 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3086g00031 K08790 - gmx:100805439 1023.85