LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3086g00030	ATGGATCATGTTATTGGTGGAAAATTCAAGCTTGGGAGGAAGATTGGGAGTGGATCGTTTGGAGAGCTTTATTTGGGTGTTAATGTACAAAATGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTATATACTTCTTCAAGGGGGAACTGGTATACCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTACAATGTCATGGTCATTGATCTTCTTGGCCCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGGAAATTTTCTCTGAAAACAGTTCTGATGCTTGCAGATCAGCTAATAAACAGAGTTGAGTATATGCACTCCCGGGGTTTTCTGCACCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGTAAGGCAAATCAGCAGGTATACGTAATTGATTATGGCCTTGCAAAAAAGTACCGGGATCTCCAAACCCATAAGCATATACCATACAGGGAAAACAAAAACCTCACGGGAACTGCTCGGTATGCAAGTGTCAACACTCATCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCGCTTGGTTATGTGCTGATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAAAAATACGATAGGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTTTTATGCAAGTCATATCCATTGGAATTCACATCATACTTCCACTACTGCCGTTCATTGCGGTTTGAAGATAAGCCTGATTATTCGTATCTTAAGAGACTCTTTCGGGATCTATTCATCCGAGAAGGCTATCAATTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAGCTCGACCAAGTGGTAAACCAGTCATAAATGCAGGACAATCAGGAGAGAGATTAGAACGGCCTTCAGGCGGACCAGAGATTCGGGATAGATTCTCAGGTGCAGTCGAGGCATTTGCAAGGAGGAGTGGCTCTGGGCTTGCTCTACATAGGTCTTCAGATGATGTGCCATCTTCCAAAGACGTGCAAGCTGATTCTGAGAGGCCACGCAGCTTTTCTCGTAATGGCAGTTCCTCAAAAAGGCCTGTCTTATCAAGCAGCCGACCAAGCTCTTCTGGTGAGCCTAGTGAAAGCCGTTCCAATCGACTGGTTTCGAGCAGTAGCCGTCTATCTGCAACTCAGAGGTCTCAACCAGGATTTGAGTCCAAAACATATTTTACTCGTGCTTCAGGGACAAGAGGGGGTCGGGATGATGCACTCAGGAGCTTTGAGCTCCTGTCAATTGGTACAGGAAAAAGGAAATGA	1374	0.4338	MDHVIGGKFKLGRKIGSGSFGELYLGVNVQNGEEVAVKLESVKTKHPQLHYESKLYILLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMLTPIEVLCKSYPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARPSGKPVINAGQSGERLERPSGGPEIRDRFSGAVEAFARRSGSGLALHRSSDDVPSSKDVQADSERPRSFSRNGSSSKRPVLSSSRPSSSGEPSESRSNRLVSSSSRLSATQRSQPGFESKTYFTRASGTRGGRDDALRSFELLSIGTGKRK	457

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gabi3086g00030	457	Gene3D	Transferase(Phosphotransferase) domain 1	1	323	-	-
Gabi3086g00030	457	ProSitePatterns	Protein kinases ATP-binding region signature.	15	38	IPR017441	GO:0005524
Gabi3086g00030	457	FunFam	Putative Casein kinase I	1	85	-	-
Gabi3086g00030	457	SMART	serkin_6	9	429	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gabi3086g00030	457	FunFam	Casein kinase 1-like protein	1	330	-	-
Gabi3086g00030	457	SUPERFAMILY	Protein kinase-like (PK-like)	4	291	IPR011009	-
Gabi3086g00030	457	PANTHER	CASEIN KINASE-RELATED	9	411	-	-
Gabi3086g00030	457	MobiDBLite	consensus disorder prediction	372	432	-	-
Gabi3086g00030	457	MobiDBLite	consensus disorder prediction	357	371	-	-
Gabi3086g00030	457	ProSiteProfiles	Protein kinase domain profile.	9	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3086g00030	Gabi-Chr3086	263032	270764	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3086g00030	8	214	MAP Kinase Kinase Kinase	AT3G06030	25.346	1.42e-13	70.9

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1	Gabi3086g00030		Pkinase	1.5e-25	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3086g00030	K08960		-	gmx:100804897	797.734

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