Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3086g00029 ATGGATCATGTTATTGGTGGAAAATTCAAGCTTGGGAGGAAGATTGGGAGTGGATCGTTTGGAGAGCTTTATTTGGGTGTTAATGTACAAAATGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTATATACTTCTTCAAGGGGGAACTGGTATACCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTACAATGTCATGGTCATTGATCTTCTTGGCCCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGGAAATTTTCTCTGAAAACAGTTCTGATGCTTGCAGATCAGCTAATAAACAGAGTTGAGTATATGCACTCCCGGGGTTTTCTGCACCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGTAAGGCAAATCAGGTATACGTAATTGATTATGGCCTTGCAAAAAAGTACCGGGATCTCCAAACCCATAAGCATATACCATACAGGGAAAACAAAAACCTCACGGGAACTGCTCGGTATGCAAGTGTCAACACTCATCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCGCTTGGTTATGTGCTGATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAAAAATACGATAGGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTTTTATGCAAGTCATATCCATTGGAATTCACATCATACTTCCACTACTGCCGTTCATTGCGGTTTGAAGATAAGCCTGATTATTCGTATCTTAAGAGACTCTTTCGGGATCTATTCATCCGAGAAGGCTATCAATTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAGCTCGACCAAGTGGTAAACCAGTCATAAATGCAGGACAATCAGGAGAGAGATTAGAACGGCCTTCAGGCGGACCAGAGATTCGGGATAGATTCTCAGGTGCAGTCGAGGCATTTGCAAGGAGGAGTGGCTCTGGGCTTGCTCTACATAGGTCTTCAGATGATGTGCCATCTTCCAAAGACGTGCAAGCTGATTCTGAGAGGCCACGCAGCTTTTCTCGTAATGGCAGTTCCTCAAAAAGGCCTGTCTTATCAAGCAGCCGACCAAGCTCTTCTGGTGAGCCTAGTGAAAGCCGTTCCAATCGACTGGTTTCGAGCAGTAGCCGTCTATCTGCAACTCAGAGGTCTCAACCAGGATTTGAGTCCAAAACATATTTTACTCGTGCTTCAGGGACAAGAGGGGGTCGGGATGATGCACTCAGGAGCTTTGAGCTCCTGTCAATTGGTACAGGAAAAAGGAAATGA 1371 0.4333 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQNGEEVAVKLESVKTKHPQLHYESKLYILLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMLTPIEVLCKSYPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARPSGKPVINAGQSGERLERPSGGPEIRDRFSGAVEAFARRSGSGLALHRSSDDVPSSKDVQADSERPRSFSRNGSSSKRPVLSSSRPSSSGEPSESRSNRLVSSSSRLSATQRSQPGFESKTYFTRASGTRGGRDDALRSFELLSIGTGKRK 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3086g00029 456 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gabi3086g00029 456 CDD STKc_CK1_delta_epsilon 8 282 - -
Gabi3086g00029 456 FunFam Putative Casein kinase I 1 85 - -
Gabi3086g00029 456 MobiDBLite consensus disorder prediction 349 439 - -
Gabi3086g00029 456 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3086g00029 456 FunFam Casein kinase 1-like protein 1 329 - -
Gabi3086g00029 456 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Gabi3086g00029 456 MobiDBLite consensus disorder prediction 300 329 - -
Gabi3086g00029 456 PANTHER CASEIN KINASE-RELATED 9 410 - -
Gabi3086g00029 456 SMART serkin_6 9 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3086g00029 456 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3086g00029 456 Gene3D Transferase(Phosphotransferase) domain 1 1 322 - -
Gabi3086g00029 456 MobiDBLite consensus disorder prediction 371 431 - -
Gabi3086g00029 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gabi3086g00029 456 MobiDBLite consensus disorder prediction 356 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3086g00029 Gabi-Chr3086 263032 270764 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3086g00029 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 6.37e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi3086g00029 Pkinase 1.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3086g00029 K08960 - gmx:100804897 802.357