Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3086g00028 ATGGATCATGTTATTGGTGGAAAATTCAAGCTTGGGAGGAAGATTGGGAGTGGATCGTTTGGAGAGCTTTATTTGGGTGTTAATGTACAAAATGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTATATACTTCTTCAAGGGGGAACTGGTATACCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTACAATGTCATGGTCATTGATCTTCTTGGCCCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGGAAATTTTCTCTGAAAACAGTTCTGATGCTTGCAGATCAGCTAATAAACAGAGTTGAGTATATGCACTCCCGGGGTTTTCTGCACCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGTAAGGCAAATCAGGTATACGTAATTGATTATGGCCTTGCAAAAAAGTACCGGGATCTCCAAACCCATAAGCATATACCATACAGGGAAAACAAAAACCTCACGGGAACTGCTCGGTATGCAAGTGTCAACACTCATCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCGCTTGGTTATGTGCTGATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAAAAATACGATAGGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTTTTATGCAAGTCATATCCATTGGAATTCACATCATACTTCCACTACTGCCGTTCATTGCGGTTTGAAGATAAGCCTGATTATTCGTATCTTAAGAGACTCTTTCGGGATCTATTCATCCGAGAAGGCTATCAATTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAGCTCGACCAAGTGGTAAACCAGTCATAAATGCAGGACAATCAGGAGAGAGATTAGAACGGCCTTCAGGCGGACCAGAGATTCGGGATAGATTCTCAGGTGCAGTCGAGGCATTTGCAAGGAGGAGTGGCTCTGGGCTTGCTCTACATAGGTCTTCAGATGATGTGCCATCTTCCAAAGACGTGAGGCCACGCAGCTTTTCTCGTAATGGCAGTTCCTCAAAAAGGCCTGTCTTATCAAGCAGCCGACCAAGCTCTTCTGGTGAGCCTAGTGAAAGCCGTTCCAATCGACTGGTTTCGAGCAGTAGCCGTCTATCTGCAACTCAGAGGTCTCAACCAGGATTTGAGTCCAAAACATATTTTACTCGTGCTTCAGGGACAAGAGGGGGTCGGGATGATGCACTCAGGAGCTTTGAGCTCCTGTCAATTGGTACAGGAAAAAGGAAATGA 1356 0.4329 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQNGEEVAVKLESVKTKHPQLHYESKLYILLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMLTPIEVLCKSYPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARPSGKPVINAGQSGERLERPSGGPEIRDRFSGAVEAFARRSGSGLALHRSSDDVPSSKDVRPRSFSRNGSSSKRPVLSSSRPSSSGEPSESRSNRLVSSSSRLSATQRSQPGFESKTYFTRASGTRGGRDDALRSFELLSIGTGKRK 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3086g00028 451 PANTHER CASEIN KINASE-RELATED 9 408 - -
Gabi3086g00028 451 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gabi3086g00028 451 CDD STKc_CK1_delta_epsilon 8 282 - -
Gabi3086g00028 451 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Gabi3086g00028 451 Gene3D Transferase(Phosphotransferase) domain 1 1 322 - -
Gabi3086g00028 451 MobiDBLite consensus disorder prediction 300 329 - -
Gabi3086g00028 451 MobiDBLite consensus disorder prediction 349 435 - -
Gabi3086g00028 451 MobiDBLite consensus disorder prediction 365 426 - -
Gabi3086g00028 451 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3086g00028 451 SMART serkin_6 9 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3086g00028 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gabi3086g00028 451 FunFam Casein kinase 1-like protein 1 329 - -
Gabi3086g00028 451 FunFam Putative Casein kinase I 1 85 - -
Gabi3086g00028 451 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3086g00028 Gabi-Chr3086 263032 270764 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3086g00028 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 6.58e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi3086g00028 Pkinase 1.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3086g00028 K08960 - gmx:100804897 786.949