Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3086g00027 ATGGATCATGTTATTGGTGGAAAATTCAAGCTTGGGAGGAAGATTGGGAGTGTTAATGTACAAAATGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTATATACTTCTTCAAGGGGGAACTGGTATACCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTACAATGTCATGGTCATTGATCTTCTTGGCCCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGGAAATTTTCTCTGAAAACAGTTCTGATGCTTGCAGATCAGCTAATAAACAGAGTTGAGTATATGCACTCCCGGGGTTTTCTGCACCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGTAAGGCAAATCAGGTATACGTAATTGATTATGGCCTTGCAAAAAAGTACCGGGATCTCCAAACCCATAAGCATATACCATACAGGGAAAACAAAAACCTCACGGGAACTGCTCGGTATGCAAGTGTCAACACTCATCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCGCTTGGTTATGTGCTGATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAAAAATACGATAGGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTTTTATGCAAGTCATATCCATTGGAATTCACATCATACTTCCACTACTGCCGTTCATTGCGGTTTGAAGATAAGCCTGATTATTCGTATCTTAAGAGACTCTTTCGGGATCTATTCATCCGAGAAGGCTATCAATTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAGCTCGACCAAGTGGTAAACCAGTCATAAATGCAGGACAATCAGGAGAGAGATTAGAACGGCCTTCAGGCGGACCAGAGATTCGGGATAGATTCTCAGGTGCAGTCGAGGCATTTGCAAGGAGGAGTGGCTCTGGGCTTGCTCTACATAGGTCTTCAGATGATGTGCCATCTTCCAAAGACGTGAGGCCACGCAGCTTTTCTCGTAATGGCAGTTCCTCAAAAAGGCCTGTCTTATCAAGCAGCCGACCAAGCTCTTCTGGTGAGCCTAGTGAAAGCCGTTCCAATCGACTGGTTTCGAGCAGTAGCCGTCTATCTGCAACTCAGAGGTCTCAACCAGGATTTGAGTCCAAAACATATTTTACTCGTGCTTCAGGGACAAGAGGGGGTCGGGATGATGCACTCAGGAGCTTTGAGCTCCTGTCAATTGGTACAGGAAAAAGGAAATGA 1329 0.4327 MDHVIGGKFKLGRKIGSVNVQNGEEVAVKLESVKTKHPQLHYESKLYILLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMLTPIEVLCKSYPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARPSGKPVINAGQSGERLERPSGGPEIRDRFSGAVEAFARRSGSGLALHRSSDDVPSSKDVRPRSFSRNGSSSKRPVLSSSRPSSSGEPSESRSNRLVSSSSRLSATQRSQPGFESKTYFTRASGTRGGRDDALRSFELLSIGTGKRK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3086g00027 442 SMART serkin_6 9 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3086g00027 442 MobiDBLite consensus disorder prediction 340 426 - -
Gabi3086g00027 442 MobiDBLite consensus disorder prediction 291 320 - -
Gabi3086g00027 442 MobiDBLite consensus disorder prediction 356 417 - -
Gabi3086g00027 442 ProSiteProfiles Protein kinase domain profile. 1 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3086g00027 442 PANTHER CASEIN KINASE-RELATED 9 399 - -
Gabi3086g00027 442 CDD STKc_CK1_delta_epsilon 8 273 - -
Gabi3086g00027 442 FunFam Casein kinase I isoform alpha 18 76 - -
Gabi3086g00027 442 Pfam Protein kinase domain 17 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3086g00027 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 115 127 IPR008271 GO:0004672|GO:0006468
Gabi3086g00027 442 Gene3D Transferase(Phosphotransferase) domain 1 1 313 - -
Gabi3086g00027 442 SUPERFAMILY Protein kinase-like (PK-like) 4 281 IPR011009 -
Gabi3086g00027 442 FunFam Casein kinase 1-like protein 1 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3086g00027 Gabi-Chr3086 263032 270764 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3086g00027 82 272 MAP Kinase Kinase Kinase AT1G62400 28.934 6.72e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi3086g00027 Pkinase 5.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3086g00027 K08960 - gmx:100804897 760.755