Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3086g00004 ATGAAGAGGAACTGTTTGAGCACTAGCTTGAAAGGTTCCATGCAGAGTTCTATCACCAACTGTGTCAACTGCTGCAACAAGAACCAAATGGCAAAAGAGCTTTGGGACTGCAACAACTCTCATAGTAATGGTGAGGACTACATCAATGGCTTCCCATGGCCACCAAGATCATATACTTGTAGCTTTTGCAGAAAGGAATTCAAGTCTGCTCAAGCACTTGGTGGTCACATGAATGTTCATAGAAGAGACAGAGCAAGGTTGAGGCAATCACCTCCAACTGATCAAGGTCAAGACCCTTTGCTGAACCTTAACCTTAACCCTAACTGTTCAACCTCTTCTTTATCCTCATTTCCATCATCATCATCTTCTTCATCTTCTGCTACTCTCAAACCTGCCACTTGCACATTACCCTTGTTTGTTTCTCCTACTCCTCCTTCACCTTCTGAGTTGAAGAGATCATTGGGTGTTGTGGATGGTACTGTCCTATTGAACCCTTTGACCACAAAGACCTCAGAGCCCACAAAATTGAAGATTAATGCTGAGTCTTTATCAGGGGTTGGAGAATGTGATGATGATGCTTTTGCAAGAGAAGATGGGTGTAAAATCTTGAAGAATGCTGAGATCCTCAGGATGGACTTGGAGATAGGTTTGCCTAGAGATTATGATTTAGATCTGGAGCTTCGTTTGGGTACTTACTCTTAG 702 0.4288 MKRNCLSTSLKGSMQSSITNCVNCCNKNQMAKELWDCNNSHSNGEDYINGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPTDQGQDPLLNLNLNPNCSTSSLSSFPSSSSSSSSATLKPATCTLPLFVSPTPPSPSELKRSLGVVDGTVLLNPLTTKTSEPTKLKINAESLSGVGECDDDAFAREDGCKILKNAEILRMDLEIGLPRDYDLDLELRLGTYS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3086g00004 233 SMART c2h2final6 58 80 IPR013087 -
Gabi3086g00004 233 Pfam C2H2-type zinc finger 58 82 - -
Gabi3086g00004 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Gabi3086g00004 233 MobiDBLite consensus disorder prediction 74 102 - -
Gabi3086g00004 233 SUPERFAMILY beta-beta-alpha zinc fingers 55 84 IPR036236 -
Gabi3086g00004 233 PANTHER OS07G0101800 PROTEIN 41 231 - -
Gabi3086g00004 233 Gene3D Classic Zinc Finger 54 99 - -
Gabi3086g00004 233 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3086g00004 Gabi-Chr3086 49346 50047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3086g00004 36 230 C2H2 Transcription Factor Family AT3G23130 42.132 4.02e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3086g00004 zf-C2H2_6 1.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3086g00004 - - var:108333719 266.544