Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3086g00002 ATGTCTCTGAGGAAGGTCTTTCGCTCTCGCAAATTCTCCAGATCCTTCAAGGAAGTTCGTTCCTTCGATGCCGCCGCCGGCGAAGAATCGGCTCACGGCAATGCGTGGTCAAACATGCTACCGGAGCTTCTCGGAGAGATCATACGCAGAGTGGACGCCACCGAGGAACAGTGGCCTCACCGGCAAAACGTCGTCGCTTGCGCCTGCGTTTGTAAGCGTTGGAGGGACATGACGCGTGAGATCGTAAAATCACCGTCTCACAACGGAAAAATCACTTTCCCTTCGTGCCTTAAACAGCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCAACGTTTTACCTCTATCTTGCCCTTACACCATCATTCACAGATAAAGGGAAGTTCCTGTTAGCAGCTAGGAGATATAGGTGTGGTACCCATACTGAGTATATAATATCACTCGATGCTGACGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACAATATATGACAGCCAGCCGCCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCTAGCCGTCGTTTTGCCAGCAAGCAGATAAGCCCTCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGGATGGTTTGCTCACTGAAATCTCCTGTCTCAACAACGAGTGAAAGTTCAGATAGCATATCTCTGGATGGCCATAAAATGCATAGTAGAGAACTTGCTGCTTTTGGCTACACTATCTTGAAGAATAAAGCTCCAAGGTGGCATGAGCATTTGCAATGCTGGTGCTTGAATTTCCATGGTCGTGTGACAGTGGCATCAGTGAAGAACTTTCAGCTGGTTGCTACTGTGGATCCAAGCCAACCAGGAGGAAAAGGAGATGAGGAAACAGTTCTCCTCCAGTTTGGTAAAGTAGGGGATGATACTTTTACCATGGATTATAGACAACCCTTATCTGCCTTTCAGGCTTTTGCCATTTGCTTGACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1098 0.4781 MSLRKVFRSRKFSRSFKEVRSFDAAAGEESAHGNAWSNMLPELLGEIIRRVDATEEQWPHRQNVVACACVCKRWRDMTREIVKSPSHNGKITFPSCLKQPGPRDVPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKSPVSTTSESSDSISLDGHKMHSRELAAFGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDPSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3086g00002 365 CDD F-box_AtTLP-like 36 80 - -
Gabi3086g00002 365 ProSitePatterns Tub family signature 1. 293 306 IPR018066 -
Gabi3086g00002 365 SUPERFAMILY F-box domain 33 79 IPR036047 GO:0005515
Gabi3086g00002 365 PANTHER TUBBY-RELATED 33 363 - -
Gabi3086g00002 365 Pfam Tub family 97 360 IPR000007 -
Gabi3086g00002 365 SUPERFAMILY Tubby C-terminal domain-like 85 365 IPR025659 -
Gabi3086g00002 365 ProSitePatterns Tub family signature 2. 350 365 IPR018066 -
Gabi3086g00002 365 PRINTS Tubby superfamily signature 216 243 IPR000007 -
Gabi3086g00002 365 PRINTS Tubby superfamily signature 151 167 IPR000007 -
Gabi3086g00002 365 PRINTS Tubby superfamily signature 322 341 IPR000007 -
Gabi3086g00002 365 PRINTS Tubby superfamily signature 343 365 IPR000007 -
Gabi3086g00002 365 PRINTS Tubby superfamily signature 167 191 IPR000007 -
Gabi3086g00002 365 PRINTS Tubby superfamily signature 275 292 IPR000007 -
Gabi3086g00002 365 PRINTS Tubby superfamily signature 293 309 IPR000007 -
Gabi3086g00002 365 Gene3D Tubby Protein; Chain A 92 365 IPR025659 -
Gabi3086g00002 365 Pfam F-box domain 36 82 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3086g00002 Gabi-Chr3086 7878 12527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3086g00002 1 365 TUB Transcription Factor Family AT1G53320 72.823 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gabi3086g00002 Tub 4.6e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3086g00002 K19600 - gmx:100801919 645.195