Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3086g00001 ATGACAAGTTCCATGTCTCTGAGGAAGGTCTTTCGCTCTCGCAAATTCTCCAGATCCTTCAAGGAAGTTCGTTCCTTCGATGCCGCCGCCGGCGAAGAATCGGCTCACGGCAATGCGTGGTCAAACATGCTACCGGAGCTTCTCGGAGAGATCATACGCAGAGTGGACGCCACCGAGGAACAGTGGCCTCACCGGCAAAACGTCGTCGCTTGCGCCTGCGTTTGTAAGCGTTGGAGGGACATGACGCGTGAGATCGTAAAATCACCGTCTCACAACGGAAAAATCACTTTCCCTTCGTGCCTTAAACAGCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCAACGTTTTACCTCTATCTTGCCCTTACACCATCATTCACAGATAAAGGGAAGTTCCTGTTAGCAGCTAGGAGATATAGGTGTGGTACCCATACTGAGTATATAATATCACTCGATGCTGACGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACAATATATGACAGCCAGCCGCCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCTAGCCGTCGTTTTGCCAGCAAGCAGATAAGCCCTCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGGATGGTTTGCTCACTGAAATCTCCTGTCTCAACAACGAGTGAAAGTTCAGATAGCATATCTCTGGATGGCCATAAAATGCATAGTAGAGAACTTGCTGCTTTTGGCTACACTATCTTGAAGAATAAAGCTCCAAGGTGGCATGAGCATTTGCAATGCTGGTGCTTGAATTTCCATGGTCGTGTGACAGTGGCATCAGTGAAGAACTTTCAGCTGGTTGCTACTGTGGATCCAAGCCAACCAGGAGGAAAAGGAGATGAGGAAACAGTTCTCCTCCAGTTTGGTAAAGTAGGGGATGATACTTTTACCATGGATTATAGACAACCCTTATCTGCCTTTCAGGCTTTTGCCATTTGCTTGACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1110 0.4775 MTSSMSLRKVFRSRKFSRSFKEVRSFDAAAGEESAHGNAWSNMLPELLGEIIRRVDATEEQWPHRQNVVACACVCKRWRDMTREIVKSPSHNGKITFPSCLKQPGPRDVPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKSPVSTTSESSDSISLDGHKMHSRELAAFGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDPSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3086g00001 369 CDD F-box_AtTLP-like 40 84 - -
Gabi3086g00001 369 PANTHER TUBBY-RELATED 37 367 - -
Gabi3086g00001 369 SUPERFAMILY F-box domain 37 83 IPR036047 GO:0005515
Gabi3086g00001 369 SUPERFAMILY Tubby C-terminal domain-like 89 369 IPR025659 -
Gabi3086g00001 369 Pfam F-box domain 40 86 IPR001810 GO:0005515
Gabi3086g00001 369 ProSitePatterns Tub family signature 2. 354 369 IPR018066 -
Gabi3086g00001 369 Gene3D Tubby Protein; Chain A 96 369 IPR025659 -
Gabi3086g00001 369 PRINTS Tubby superfamily signature 279 296 IPR000007 -
Gabi3086g00001 369 PRINTS Tubby superfamily signature 171 195 IPR000007 -
Gabi3086g00001 369 PRINTS Tubby superfamily signature 220 247 IPR000007 -
Gabi3086g00001 369 PRINTS Tubby superfamily signature 297 313 IPR000007 -
Gabi3086g00001 369 PRINTS Tubby superfamily signature 155 171 IPR000007 -
Gabi3086g00001 369 PRINTS Tubby superfamily signature 347 369 IPR000007 -
Gabi3086g00001 369 PRINTS Tubby superfamily signature 326 345 IPR000007 -
Gabi3086g00001 369 ProSitePatterns Tub family signature 1. 297 310 IPR018066 -
Gabi3086g00001 369 Pfam Tub family 101 364 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3086g00001 Gabi-Chr3086 7878 12860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3086g00001 5 369 TUB Transcription Factor Family AT1G53320 72.823 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gabi3086g00001 Tub 4.7e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3086g00001 K19600 - gmx:100801919 645.195