Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3085g00032 ATGGACAAGATTGAGAGTGTAACTTACTCTGCAGGTGTCGTTTTGTTCGGGAAATACGAGATAGTGAAGTTGCTGGGCGTTGGCGGGTTCGCGAAGGTGTACCACGCGCGGAACGTGAACACGATGGAGAGCGTGGCGGTGAAGGCCGTGAGCAAACGCAAGGTCCAGAAAAACGGTTACATGGCGCACGTTGAGCGCGAAGTCTCTATCATGCGCCGACTGCGCCACCCGCACACTGTGGAACTCTTCGAGGTCCTCGCAACCAAGACTAAGATCTACTTCGTCATGGAGTTTGCATCCGGCGGCGACCTCTTCGGAGTTATGGCCGCCGAGGGACGCTTCACGGAGGATCTCAGCCGGAGATATTTCCGGCAGCTCATCTCCGCCGTCAAGCACTGCCACTCCCGCGGTGTCTTCCACCGCGACCTCAAGCTCGACAACATCCTCGTCGACGAAAACAAGAACATCAAAGTGTCGGATTTCGGGTTGGGCTCAATTAAGGACCCGACCCGACCCGAAGGTTTGCTCCATACAGTTTGTGGGACCCCTGCCTACGTGGCACCTGAGATCCTCGCTAGGAAGGGCTATGATGGTGCGACGGTGGATGTGTGGTCTTGCGGCGTCGTTTTGTTCGTACTCACCGCTGGGTATTTGCCCTTCAATGATTACAATATTACGGTTTTGTACAGGAAGATCTATAGAGGACAGTTCCGGTTCCCGAAATGGACATCGAATGAACTGAGGAACCTCTTATCGAGGTTGTTGGACACAAACCCAAATACGAGAATAACCGTTGATGAGATCATGCGGGACCCATGGTTCTGTCATGGCGGGTATAAGGACACATGGGTCGGGTCGGACCCTGAACGGGAGAAGAATTATCAGGCTGTGACTAAGAGATTGAACGCGTTTGATTTGATATCTTTTTCATCCGGGTTGGACATGTCGGGTTTATTTACTGACCCGGAACATTCGGATTGCACTGAACGGTTTGTCACGGAGAAGTTGCCGCAGAAGGTGGTGGAGATGGTGGAGGAGGTGGCGGAGATGGAAAGACTAGTGAGAGTGATAAAGGGTGGTGAGAGCGGTTGTGGAGGAGTGAGGCTAGAGGGGTTGAATGGTAATTTTGGAATTGTTGTTCGGGTTTACCGGTTAACGGATGAGCTTTATGTGATTGAAGTGAAGAGAAGTGAGAGAGGAGTGGCAATTGGTGAACGGTTTTGGAGAGATGCTTTAAAGCCACGGCTTCTTGCATTGGCTCTTAAACCGGATGTGCCTGTCTCCCGGTGA 1290 0.5217 MDKIESVTYSAGVVLFGKYEIVKLLGVGGFAKVYHARNVNTMESVAVKAVSKRKVQKNGYMAHVEREVSIMRRLRHPHTVELFEVLATKTKIYFVMEFASGGDLFGVMAAEGRFTEDLSRRYFRQLISAVKHCHSRGVFHRDLKLDNILVDENKNIKVSDFGLGSIKDPTRPEGLLHTVCGTPAYVAPEILARKGYDGATVDVWSCGVVLFVLTAGYLPFNDYNITVLYRKIYRGQFRFPKWTSNELRNLLSRLLDTNPNTRITVDEIMRDPWFCHGGYKDTWVGSDPEREKNYQAVTKRLNAFDLISFSSGLDMSGLFTDPEHSDCTERFVTEKLPQKVVEMVEEVAEMERLVRVIKGGESGCGGVRLEGLNGNFGIVVRVYRLTDELYVIEVKRSERGVAIGERFWRDALKPRLLALALKPDVPVSR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3085g00032 429 SMART serkin_6 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3085g00032 429 FunFam CAMK family protein kinase 14 303 - -
Gabi3085g00032 429 SUPERFAMILY Protein kinase-like (PK-like) 15 295 IPR011009 -
Gabi3085g00032 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Gabi3085g00032 429 CDD CIPK_C 302 414 - -
Gabi3085g00032 429 Pfam NAF domain 300 353 IPR004041 GO:0007165
Gabi3085g00032 429 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 396 - -
Gabi3085g00032 429 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165
Gabi3085g00032 429 ProSiteProfiles Protein kinase domain profile. 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3085g00032 429 Gene3D Kinase associated domain 1, KA1 297 420 - -
Gabi3085g00032 429 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Gabi3085g00032 429 Gene3D Transferase(Phosphotransferase) domain 1 101 278 - -
Gabi3085g00032 429 Pfam Protein kinase domain 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3085g00032 429 FunFam Aurora kinase A 13 102 - -
Gabi3085g00032 429 Gene3D Phosphorylase Kinase; domain 1 16 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3085g00032 Gabi-Chr3085 425474 428986 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3085g00032 14 417 CBL-interacting serine-threonine protein kinases AT2G30360 55.012 1.61e-159 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi3085g00032 Pkinase 5.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3085g00032 - K12761 gmx:100810319 499.975