Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3085g00030 ATGGCGATTTCTCCTCAATCGTTCTCACCTAGAAAACGACGACCCTCGGCGGGGTCGTTTATCTCTCCGAAGCTGAACGACATCAACCTCCTTAACTCTCTGCTCCACCTCACCCACCAGATATGTTCCCCAAACGACACCACCACCCACTTCCTCCTCAACCGCACTTCCTCCTCCACAATCCGCAAAACGCAGCTCCTCGGCGTCGTTTTGGAAGACCTTCTTCGCGTTTCGTCTTCCTCTTCCACTTCCACCCCTCTAAGCTCCTACTCTCTCATCCTCTGCCTCGAGGAAATGTACATCGTGCTGCACAGGATCAAAACCCTCGTTGAAGATTGCTCCAAAGGAAGCAAATTCTCCACGCTCATGCAAATCGAAACCATCGCCGACACCTTCTACAAGCTCACCGGAGAATTATCTACGCTTCTGGATATCTTCCCCGTTCATGAGCTCCACCTCAACGACGACGTTCGGGAACTGGTTCTCCTTATCAGAAAACAGTGCTCCGAATCCAAGCCTCTCCTGGGAAAGGAAGAAATTGAGCTCAGAAACGATGTCGTTTCGGTGCTCGAGCGGATCAAGAAGGAGATTGTTCCTGATCAGGCAAACCTAGCTTCGATTTTCGAGAAATTGGAGATTCGCGATTCTTCGAGTTGCAGAGCGGAGATTGAGAATTTAGAAGAAGAAATTCAGAATCAGAGCGACGAACAATCGAAAGCTGAGATCGTGGCTTTGATCGGGCTCGTTCGATACGCCAAGTGTGTTCTCTTCGGTGCATCTACACCTTCGCCGCGAAGTGAGAGTCTGCGGCGGAAACAGTCGTTGGAGGTGGTGGTTCCGACGGATTATCGATGCCCTATTAGTTTGGACCTGATGCGGGACCCAGTCGTCGTGGCAACAGGACAGACGTACGATCGGGTATCCATCAAGCTCTGGATGGATTCAGGACACAACACGTGTCCCAAAACAGGTCAAAGCCTGGCCCACACAGATCTCATCCCTAACCACGCGCTCAGGAACATGATAGCATTGTGGTGCCGCGAGCAGAGAATACCGTTCGAAGCGGAAACCGTTTCAGGAAAACTCAACGGCGGCGTAACCAACAAAGCTGCATTAGAAGCCACACGAATGACGGCGTCGTTTTTAGTCAACAAGCTCAAGGTCCCTTTAGCTGACTCAAACGCCGTCGTTTACGAGCTTCGGGTTCTGGCAAAAACAGACTCGGACAGCCGTGCCTGCATCGCCGAAGCAGGAGCTATTCCGCTTCTGGTTCGGTACCTAAGCTACGACGTTGGTTTGCACCATCCGAGTCTCCAGGTTAACGCCGTCACGACGATCCTCAACCTTTCTATTCTCGAAGCAAACAAGACGAGGATAATGGAAACTGACGGCGCCTTAAACGGCGTCGCGGAGGTGCTTCGCTCCGGCGCCACGTGGGAGGCGAAGGCGAACGCGGCGGCGACGGTGTTCAGTTTATCAGGTGTGCCGGCGTACAGGAAAAGGCTCGGGAAGAAGACACGTGTCGTCAGCGGGTTGATCGAGCTGGCGAAGTGTGGGCCCGACGGTGCTAAGAGGGACGCTTTGGTTGCAATACTGAACCTCGCGGCGGATAGGGAAACCGTGGCGAGGTTGGTGGAGGGTGGCGCGGTGGAGATGACGGCGGAGGTCATGGCGGCGATGCCGGAGGAGGGGGTGACGATTCTTGAGGCGGTGGTGAAGCGTGGCGGGTTGGTGGCGGTGGCTGCGGCGTACTCTGGGATCAAGAAATTGGGGACGGTCTTGAGGGAGGGTACGGAGAGGGCGAGAGAGAGTGCGGCGGCGACGCTTGTGACGATGTGTAGGAAGGGGGGTTCGGAGATTGTGGCGGAGCTGGCGGCGATTCCGGGGGTGGAGAGGGTGATTTGGGAGTTGATGGCGGTGGGAAGTGTGAGAGGGAGAAGGAAGGCGGCGACGCTGTTGAGGATTCTGCGGCGGTGGGCGGCGGGTTTGGACGGTACAGAGACTGAAGGATTCTCAACTACCATGATCAGTTCGACAACTACAACTGTTGTTCCAACTTCCACTTCGTTCGCACAGTAA 2079 0.5493 MAISPQSFSPRKRRPSAGSFISPKLNDINLLNSLLHLTHQICSPNDTTTHFLLNRTSSSTIRKTQLLGVVLEDLLRVSSSSSTSTPLSSYSLILCLEEMYIVLHRIKTLVEDCSKGSKFSTLMQIETIADTFYKLTGELSTLLDIFPVHELHLNDDVRELVLLIRKQCSESKPLLGKEEIELRNDVVSVLERIKKEIVPDQANLASIFEKLEIRDSSSCRAEIENLEEEIQNQSDEQSKAEIVALIGLVRYAKCVLFGASTPSPRSESLRRKQSLEVVVPTDYRCPISLDLMRDPVVVATGQTYDRVSIKLWMDSGHNTCPKTGQSLAHTDLIPNHALRNMIALWCREQRIPFEAETVSGKLNGGVTNKAALEATRMTASFLVNKLKVPLADSNAVVYELRVLAKTDSDSRACIAEAGAIPLLVRYLSYDVGLHHPSLQVNAVTTILNLSILEANKTRIMETDGALNGVAEVLRSGATWEAKANAAATVFSLSGVPAYRKRLGKKTRVVSGLIELAKCGPDGAKRDALVAILNLAADRETVARLVEGGAVEMTAEVMAAMPEEGVTILEAVVKRGGLVAVAAAYSGIKKLGTVLREGTERARESAAATLVTMCRKGGSEIVAELAAIPGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGTETEGFSTTMISSTTTTVVPTSTSFAQ 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3085g00030 692 FunFam RING-type E3 ubiquitin transferase 276 352 - -
Gabi3085g00030 692 Gene3D - 390 583 IPR011989 -
Gabi3085g00030 692 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3085g00030 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 356 IPR013083 -
Gabi3085g00030 692 CDD RING-Ubox_PUB 280 332 IPR045210 -
Gabi3085g00030 692 Pfam U-box domain 279 350 IPR003613 GO:0004842|GO:0016567
Gabi3085g00030 692 SMART arm_5 407 451 IPR000225 GO:0005515
Gabi3085g00030 692 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Gabi3085g00030 692 SUPERFAMILY RING/U-box 274 352 - -
Gabi3085g00030 692 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Gabi3085g00030 692 FunFam RING-type E3 ubiquitin transferase 365 551 - -
Gabi3085g00030 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 464 IPR000225 GO:0005515
Gabi3085g00030 692 PANTHER U BOX DOMAIN-CONTAINING 69 657 - -
Gabi3085g00030 692 Coils Coil 216 243 - -
Gabi3085g00030 692 SUPERFAMILY ARM repeat 395 656 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3085g00030 Gabi-Chr3085 369387 371764 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3085g00030 1 688 U-box Gene Family AT5G01830 57.081 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3085g00030 - - tpra:123922727 1013.45