Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3085g00029 ATGGGAAATTACAGGTTCAGGTTATCAGATATGATTCCCAATGCCTGGTTTTACAAGCTGAGGGACATGGGGAGCGGAAGAAAGCAAACAACCACTCCAACAAGGAAGAAAAAACAATCTTCATCAACCTCAACAACACAATCATCAAAACCAAAGCAACCCCACCAATGCAATCCTAGAAAGTCATACTACTTTACAAGGGAGCTTAGCACAAGCAATAAATTCCACACTTCACCACCACACAACCCAAAAGTCCCAGACACCAATTCACCTGAACCACCAAGAAAATCATCCAAACAAAGAACCAGGAAAAGAAGAACAACACCAAGGAACTCTTCACCTAAGCCTCTCATCAGTAGCACATATGTATCTGCTGGTTGTAGCTGCCGCACCACCCTTGAATCTGTTTTTACTAAATCCAATTCCCCACAAGAAAACTCTTCATCTCCATTTGATAGCTCTTCTGAGTCTGAATTTCCTGACTTAGAATTCAGAACAGACCGTGTTCTTCCCACTGAGTCATTTGATGAAATGGTTTCTTTGTCCACCTCTTGTGCCTGCAGGCTAAACTCCAACAACACCAAGGACATCGTTATCGATGTGGACAAGAATTCCATACCAAGAAAAGATGATAAGCTTGATGGGTATGAAACCTTTTCACAACTTGAGCTTCCTCCAATCATAACCAAGCCTCCAAAATTCAATGACTTGCTCAGTGATGCAAAGAAGAGAGAACCAAAACCAAAACCAAAACCCAAACCCAGAACCAGAACTGCTACTACACATGAAGAACTCAACGTTCAAGGATCTCTCAAGGTTAAAATTGTGAAGGAAGAAGACACAGAACAAATCAAAGAACAGAGGAATGCCCCTGTTAGAAGATTCTCTGTGAACTCTCCAGGAGTGAAGCTTCGGATCAATTCACCGAGAATTGGTCACCGGAAGGTTCATTCTCATGGCCGGAAAAGTGTGTCGTCGACGGCCAGCTCCGGTGGCTCCCGGAGAAGCCTCTCTGATAGCTTTGCAATTGTGAAATCATCTTTCAACCCACAGAAGGATTTCAGAGAGTCAATGGTGGAGATGATTGTGGGGAACAACATCAAGACTTCAAAGGATTTGGAAGATCTTCTTGCTTGCTACCTTTCTCTCAATTCAGATGAGTATCATGACCTCATTATCAGAGTGTTCAAGCAAATATGGTTTGATTTGACTGTAACAAGGTAG 1224 0.4265 MGNYRFRLSDMIPNAWFYKLRDMGSGRKQTTTPTRKKKQSSSTSTTQSSKPKQPHQCNPRKSYYFTRELSTSNKFHTSPPHNPKVPDTNSPEPPRKSSKQRTRKRRTTPRNSSPKPLISSTYVSAGCSCRTTLESVFTKSNSPQENSSSPFDSSSESEFPDLEFRTDRVLPTESFDEMVSLSTSCACRLNSNNTKDIVIDVDKNSIPRKDDKLDGYETFSQLELPPIITKPPKFNDLLSDAKKREPKPKPKPKPRTRTATTHEELNVQGSLKVKIVKEEDTEQIKEQRNAPVRRFSVNSPGVKLRINSPRIGHRKVHSHGRKSVSSTASSGGSRRSLSDSFAIVKSSFNPQKDFRESMVEMIVGNNIKTSKDLEDLLACYLSLNSDEYHDLIIRVFKQIWFDLTVTR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3085g00029 407 MobiDBLite consensus disorder prediction 308 335 - -
Gabi3085g00029 407 MobiDBLite consensus disorder prediction 230 262 - -
Gabi3085g00029 407 MobiDBLite consensus disorder prediction 25 60 - -
Gabi3085g00029 407 MobiDBLite consensus disorder prediction 137 160 - -
Gabi3085g00029 407 Pfam DNA-binding domain 1 42 IPR025830 GO:0003677
Gabi3085g00029 407 Pfam Transcriptional repressor, ovate 347 403 IPR006458 -
Gabi3085g00029 407 ProSiteProfiles OVATE domain profile. 343 402 IPR006458 -
Gabi3085g00029 407 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 52 403 IPR038933 GO:0045892
Gabi3085g00029 407 MobiDBLite consensus disorder prediction 72 120 - -
Gabi3085g00029 407 MobiDBLite consensus disorder prediction 137 156 - -
Gabi3085g00029 407 NCBIfam uncharacterized plant-specific domain TIGR01568 342 404 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3085g00029 Gabi-Chr3085 357902 359129 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Gabi3085g00029 Ovate 1.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3085g00029 - - aprc:113850281 425.246