Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3085g00028 ATGACCTTCCATGATTCGTGGATCGATGTCAATCATAGAACCTTCAACTTCATCACTGAATTGTTCACCTCTGGCACCCTACGAGAGTATAGAAGGAAGTATCCTAGAGTAGATATCAGAGCAGTGAAGAACTGGGCTCGCCAGATTCTAAGTGGTTTGGAGTATTTGCATAGCCATGATCCACCTGTGATACATAGAGACCTCAAGGGTGATAACATCTTTGTCAATGGCCATTTGGGGCAGGTCAAGATTGGTGACTTAGGACTTGCAGCCATTCTAAGTGGCTCTCAACATGCCCACAGTGTCATAGGTACGCCAGAATTTATGGCACCAGAGTTGTATGAAGAGGAATACAATGAGCTGGTAGACATATACTCTTTTGGGATGTGTATGATAGAGTTGTTTACTTCTGAGTTCCCATACAGCGAGTGCTCCAACCCTGCTCAAATTTACAAGAAAGTTACTTCAGGGAAGCTACCAGATGCATTTTACAGAATCCACGATTTGGAAGCCCAGAGGTTTGTGGGAAAATGTTTGGCAAATGTCTCAGAGAGGTTGCCAGCAAAGGAGCTCTTACTGGATCCATTTTTAGCCATGGATCAACTTGACTCACCATTGCCTAGCCCAACATTACCCAGAAAACATACTCAAACACTCAATTTCACTTCAGCAGTTGCCAAAGAGGAACCTTCAATGATTGACCAAACAAAGAGTACACACATGACAATCACTGGGTCAATAAATGAAGAGGATGACACAGTTTTCCTTAAAGTACAGATTTCTAACAAAACTGGAAACACAAGAAATATATACTTTCCATTTGACACCATAAACGACACTGCCATTGAAGTGGCAATTGAGATGGTTAAAGAACTGGAAATTAGTGACTGGGAACCATTGGAGATTGCTGAAATGATAGAAGAGGAGATATCAGCTTTAGTTCCAACATGGAGGGATTGGAGCACTTCTAAGTATCAACAACAACATAGTTTTAGCTATGAAGAAGAGGATGATATAAGTAACCACCATCCTTTCTTCTCATCATCTTCTCTCTCTTCCTCTCACGGTTCTCTCCCAGTGTTTGGTTCTTCCAACAAGAACAATACCCAACTTTATGGGAACCATTACCCTTTTGCTCAAGATTGGCCTCAAGATGATCTATTTATGAATGATGATGCGAGCTCTCAAAGCTCAATGAACTCCTTGAAGTGTTTCAATTTTCATTGCTGTGACTCAGGCAATGAAAATGAGCATAGTCCAACTATACTAGTTGGAACAGAACCAATTTGCTACACGCCAAAGGCCAACAACAAGTGCACAAGATTCTGTCCTAGAGAAGAGATGGTGGAGGCTGATTCCACCAAACAGTTTTGCAACATGAGAATGGATTCTAGCAGGTATCATAGGCCAATGCATGGATGCCAAAGTCTGACAAGGATTCATTCCTATGCGGATTTGAGGAGACACCAACTACAAAGATCACTGATAGAGGAGATACACAAGAGGAGGATGTTCAAGACGGTTGGTGCTATTGAGAACATTGGGTTTCAGAATCCAGAAAGAGGTGGATGTTATCCTCGTTGA 1584 0.4192 MTFHDSWIDVNHRTFNFITELFTSGTLREYRRKYPRVDIRAVKNWARQILSGLEYLHSHDPPVIHRDLKGDNIFVNGHLGQVKIGDLGLAAILSGSQHAHSVIGTPEFMAPELYEEEYNELVDIYSFGMCMIELFTSEFPYSECSNPAQIYKKVTSGKLPDAFYRIHDLEAQRFVGKCLANVSERLPAKELLLDPFLAMDQLDSPLPSPTLPRKHTQTLNFTSAVAKEEPSMIDQTKSTHMTITGSINEEDDTVFLKVQISNKTGNTRNIYFPFDTINDTAIEVAIEMVKELEISDWEPLEIAEMIEEEISALVPTWRDWSTSKYQQQHSFSYEEEDDISNHHPFFSSSSLSSSHGSLPVFGSSNKNNTQLYGNHYPFAQDWPQDDLFMNDDASSQSSMNSLKCFNFHCCDSGNENEHSPTILVGTEPICYTPKANNKCTRFCPREEMVEADSTKQFCNMRMDSSRYHRPMHGCQSLTRIHSYADLRRHQLQRSLIEEIHKRRMFKTVGAIENIGFQNPERGGCYPR 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3085g00028 527 Gene3D Transferase(Phosphotransferase) domain 1 22 202 - -
Gabi3085g00028 527 FunFam probable serine/threonine-protein kinase WNK9 22 202 - -
Gabi3085g00028 527 Pfam Protein kinase domain 12 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3085g00028 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 63 75 IPR008271 GO:0004672|GO:0006468
Gabi3085g00028 527 SUPERFAMILY Protein kinase-like (PK-like) 11 198 IPR011009 -
Gabi3085g00028 527 ProSiteProfiles Protein kinase domain profile. 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3085g00028 527 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 402 - -
Gabi3085g00028 527 Gene3D - 253 319 - -
Gabi3085g00028 527 SMART serkin_6 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3085g00028 Gabi-Chr3085 338697 343023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3085g00028 6 338 MAP Kinase Kinase Kinase AT3G51630 69.162 8.89e-164 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi3085g00028 Pkinase 2.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3085g00028 K08867 - gmx:100816187 875.93