Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3085g00023 ATGAGTTGCAGTGAGAGGAGCATAGGAGGAGGAGGAGGAGGAGAAGAAGAGAAGGAATATGAGGAAAACAGTTCTGAAGGATTGGAACCAAAATCAACGAGGCACAATAATGGGTCAATAGCAAACCAGCAGCTAACAATTGATGACAATCTTTTGGTTGACCCCAAACTATTGTTTATTGGTTCAAAGATTGGAGAAGGTGCTCATGGAAGAGTTTTTGAAGGAAGGTATAGAGATCGGATTGTTGCAATTAAAGTTCTACATCGTGGGAGCACTTCAGAAGAAAGAGCTTCCCTTGAAGATCGTTTTGCTCGGGAAGTTAATATGATGTCCCGTGTCCACCATGAGAATCTTGTTAAGTTTATTGGAGCTTGTAAGGATCCTCTGATGGTGATTGTTACAGAGCTGTTACCGGGGATGTCGCTGCGAAAATATTTGATCAATATACGCCCTAAACTGTTGGACCTTCATGTGGCTATAAACTTCGCCCTTGACATTGCTCGAGCCATGGATTGGCTACATGCCAATGGGATCATCCATAGAGATCTGAAACCTGACAATCTGCTGCTTACGGCAAATCATAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCTAGAGAAGAATCTGTGACTGAAATGATGACTGCAGAAACTGGAACTTATCGTTGGATGGCACCAGAGTTGTACAGTACCGTGACATTGCGTCAAGGGGAGAAAAAGCATTACAACAACAAGGTTGATGTCTACAGCTTTGGAATTGTTTTGTGGGAGCTACTAACGAACCGCATGCCTTTTGAAGGGATGTCAAATTTACAAGCTGCTTATGCTGCTGCATTTAAGATTGCAGCAAGAGAGGCCTAA 861 0.4286 MSCSERSIGGGGGGEEEKEYEENSSEGLEPKSTRHNNGSIANQQLTIDDNLLVDPKLLFIGSKIGEGAHGRVFEGRYRDRIVAIKVLHRGSTSEERASLEDRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTELLPGMSLRKYLINIRPKLLDLHVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANHKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKIAAREA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3085g00023 286 ProSiteProfiles Protein kinase domain profile. 58 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3085g00023 286 FunFam Kinase suppressor of Ras 1 47 137 - -
Gabi3085g00023 286 CDD STKc_MAP3K-like 64 272 - -
Gabi3085g00023 286 MobiDBLite consensus disorder prediction 1 38 - -
Gabi3085g00023 286 PIRSF ILK 15 281 - -
Gabi3085g00023 286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Gabi3085g00023 286 Gene3D Transferase(Phosphotransferase) domain 1 139 286 - -
Gabi3085g00023 286 Pfam Protein kinase domain 62 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3085g00023 286 SMART serkin_6 58 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3085g00023 286 SUPERFAMILY Protein kinase-like (PK-like) 50 275 IPR011009 -
Gabi3085g00023 286 MobiDBLite consensus disorder prediction 11 29 - -
Gabi3085g00023 286 ProSitePatterns Protein kinases ATP-binding region signature. 64 85 IPR017441 GO:0005524
Gabi3085g00023 286 Gene3D Phosphorylase Kinase; domain 1 46 137 - -
Gabi3085g00023 286 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 58 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3085g00023 Gabi-Chr3085 203386 208119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3085g00023 46 280 MAP Kinase Kinase Kinase AT5G01850 77.992 2.41e-145 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi3085g00023 Pkinase 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3085g00023 - - gmx:100816708 450.284