Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3085g00022 ATGAGTTGCAGTGAGAGGAGCATAGGAGGAGGAGGAGGAGGAGAAGAAGAGAAGGAATATGAGGAAAACAGTTCTGAAGGATTGGAACCAAAATCAACGAGGCACAATAATGGGTCAATAGCAAACCAGCAGCTAACAATTGATGACAATCTTTTGGTTGACCCCAAACTATTGTTTATTGGTTCAAAGATTGGAGAAGGTGCTCATGGAAGAGTTTTTGAAGGAAGGTATAGAGATCGGATTGTTGCAATTAAAGTTCTACATCGTGGGAGCACTTCAGAAGAAAGAGCTTCCCTTGAAGATCGTTTTGCTCGGGAAGTTAATATGATGTCCCGTGTCCACCATGAGAATCTTGTTAAGTTTATTGGAGCTTGTAAGGATCCTCTGATGGTGATTGTTACAGAGCTGTTACCGGGGATGTCGCTGCGAAAATATTTGATCAATATACGCCCTAAACTGTTGGACCTTCATGTGGCTATAAACTTCGCCCTTGACATTGCTCGAGCCATGGATTGGCTACATGCCAATGGGATCATCCATAGAGATCTGAAACCTGACAATCTGCTGCTTACGGCAAATCATAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCTAGAGAAGAATCTGTGACTGAAATGATGACTGCAGAAACTGGAACTTATCGTTGGATGGCACCAGAGTTGTACAGTACCGTGACATTGCGTCAAGGGGAGAAAAAGCATTACAACAACAAGGTTGATGTCTACAGCTTTGGAATTGTTTTGTGGGAGCTACTAACGAACCGCATGCCTTTTGAAGGGATGTCAAATTTACAAGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAACCTTCCTGGTGATATATCCCCTGATCTTGCCTTTATCATACAATCATGTTGGGTTGAGGATCCTAACCTGAGACCAAGCTTTAGTCAGATTATCCGCATGCTCAATGCATTTACCTTTACACTCCAACTACCAACCCCTTCATTGCCAGAACCTGACAATGAACTTGAGGCTGCCACAAGTAACGGTAACTGTACCATAACTAACTTTTCTACCCGAAACAGAGGAAAATTTGCTTTTCTTCGCCATTTGTTTTCTTCAAAGAGGACAAGAAATTATCCGTGA 1137 0.4257 MSCSERSIGGGGGGEEEKEYEENSSEGLEPKSTRHNNGSIANQQLTIDDNLLVDPKLLFIGSKIGEGAHGRVFEGRYRDRIVAIKVLHRGSTSEERASLEDRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTELLPGMSLRKYLINIRPKLLDLHVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANHKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPGDISPDLAFIIQSCWVEDPNLRPSFSQIIRMLNAFTFTLQLPTPSLPEPDNELEAATSNGNCTITNFSTRNRGKFAFLRHLFSSKRTRNYP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3085g00022 378 Pfam Protein tyrosine and serine/threonine kinase 60 319 IPR001245 GO:0004672|GO:0006468
Gabi3085g00022 378 MobiDBLite consensus disorder prediction 1 38 - -
Gabi3085g00022 378 FunFam Kinase suppressor of Ras 1 47 137 - -
Gabi3085g00022 378 Gene3D Transferase(Phosphotransferase) domain 1 141 350 - -
Gabi3085g00022 378 SMART serkin_6 58 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3085g00022 378 SUPERFAMILY Protein kinase-like (PK-like) 56 339 IPR011009 -
Gabi3085g00022 378 CDD STKc_MAP3K-like 64 319 - -
Gabi3085g00022 378 PRINTS Tyrosine kinase catalytic domain signature 246 268 IPR001245 GO:0004672|GO:0006468
Gabi3085g00022 378 PRINTS Tyrosine kinase catalytic domain signature 290 312 IPR001245 GO:0004672|GO:0006468
Gabi3085g00022 378 PRINTS Tyrosine kinase catalytic domain signature 134 147 IPR001245 GO:0004672|GO:0006468
Gabi3085g00022 378 PRINTS Tyrosine kinase catalytic domain signature 172 190 IPR001245 GO:0004672|GO:0006468
Gabi3085g00022 378 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 58 321 - -
Gabi3085g00022 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Gabi3085g00022 378 Gene3D Phosphorylase Kinase; domain 1 46 137 - -
Gabi3085g00022 378 MobiDBLite consensus disorder prediction 11 29 - -
Gabi3085g00022 378 ProSiteProfiles Protein kinase domain profile. 58 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3085g00022 378 ProSitePatterns Protein kinases ATP-binding region signature. 64 85 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3085g00022 Gabi-Chr3085 202968 208119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3085g00022 46 376 MAP Kinase Kinase Kinase AT5G01850 72.753 0.0 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi3085g00022 PK_Tyr_Ser-Thr 1.1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3085g00022 - - gmx:100816708 613.609