Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3085g00019 ATGCAAACAAAAGGAATAGTAGTTGTGCCATATTTGCTTTTCCTACTTGTTTGTATTACTAATGGCACCTATGGGCAATGGGGTGGCTGGCAGAGTGCACATGCCACATTTTATGGTGGTCGTGATGGTTCTGGCACTATGGGGGGAGCATGTGGATATGGAAACTTAATTGACCAAGGCTATGGAATTTACACAACAGCATTAAGCACTGCCCTTTTCAATGGTGGCTATAGTTGTGGGGCATGTTACCAATTGATGTGCCACAATGACCCACAATGGTGCCTCTCTGGCGCCATCACTGTTACTGCAACAAACTATTGTCCATCTAATGCTTCGTCCCATGAAAATGGACCAGGATGGTGCAATCCCCCATTGCAACATTTTGATTTATCAGTGCCAGCTTTCGAAAAGATTGGCCAATATAAAGCTGGAATAATTCCTGTGCTCTTCAGAAGGGTTACATGTGTGAGGCAAGGAGGGATAAGGTTCACCATAAAAGGGAATGCAAACTTCTATTTGGTGTTGGTAACAAATGTGGCAGGGGCTGGTGATGTTAAAGCAGTATCAATAAAAGGGTCAAATACAGGGTGGATACAAATGAGTAGAAATTGGGGGCAGAATTGGCAGAGCAACTCATACCTCATTGGACAAAGCTTGTCTTTTATGGTCACAACCAGTGATGGTAGATCAGTTACTAGTTTCAATGTGGTGCCCCAAGGTTGGCAATTTGGACGAACTTATGAAGGTCGTCAATTTTGA 759 0.4348 MQTKGIVVVPYLLFLLVCITNGTYGQWGGWQSAHATFYGGRDGSGTMGGACGYGNLIDQGYGIYTTALSTALFNGGYSCGACYQLMCHNDPQWCLSGAITVTATNYCPSNASSHENGPGWCNPPLQHFDLSVPAFEKIGQYKAGIIPVLFRRVTCVRQGGIRFTIKGNANFYLVLVTNVAGAGDVKAVSIKGSNTGWIQMSRNWGQNWQSNSYLIGQSLSFMVTTSDGRSVTSFNVVPQGWQFGRTYEGRQF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3085g00019 252 CDD DPBB_EXPA_N 29 155 - -
Gabi3085g00019 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Gabi3085g00019 252 Gene3D - 17 155 IPR036908 -
Gabi3085g00019 252 Gene3D - 160 252 IPR036749 -
Gabi3085g00019 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
Gabi3085g00019 252 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Gabi3085g00019 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Gabi3085g00019 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Gabi3085g00019 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Gabi3085g00019 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Gabi3085g00019 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Gabi3085g00019 252 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Gabi3085g00019 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Gabi3085g00019 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Gabi3085g00019 252 SMART dpbb_1 65 150 IPR007112 -
Gabi3085g00019 252 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Gabi3085g00019 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Gabi3085g00019 252 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Gabi3085g00019 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Gabi3085g00019 252 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Gabi3085g00019 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Gabi3085g00019 252 FunFam Expansin 160 252 - -
Gabi3085g00019 252 Pfam Lytic transglycolase 65 149 IPR009009 -
Gabi3085g00019 252 PANTHER EXPANSIN-A15 13 252 IPR002963 GO:0009664
Gabi3085g00019 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Gabi3085g00019 252 SUPERFAMILY Barwin-like endoglucanases 12 178 IPR036908 -
Gabi3085g00019 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3085g00019 Gabi-Chr3085 176474 177424 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3085g00019 6 252 Expansin Gene Family AT2G40610 64.919 3.27e-115 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3085g00019 - K20628 pvy:116122918 380.178