Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3085g00018 ATGCAAGTTGTGCCATATTTGCTCTTCCTACTTGTCTGTATTGCTAATGGCACCTATGGACAATGGGGTGCTTGGCAGAATGCACGTGCCACATTTTATGGTGGCCCTAATGCTTCTGGCACTAAGGGGGGAGCATGTGGATATGGAGACTTGTTTAGCTATGGCTATGGAATTTACACAACAGCTTTAAGCACTCCCCTTTACAATGGTGGCCTTAGTTGTGGGGCATGTTATGAGGTTGCTTGTCACAATGACCAACAACATTGCCTCCCTGGCTCCGTCATTGTTACTGCAACAAATTTGTGTCCCCCTGGTGGATGGTGCAACCCGCCATTGCTTCATTTTGATTTATCCCAACCAGCTTTCGAAAAGATTGGTCGAGATATAGCTGGAGTTATTCCTGTGCAATTCAGAAGGGTGACATGTACGAGGAAAGGAGGGATAAGGTTCACTATAACTGGGAATTCACATTTCAATTTGGTGTTGATAACAAATGTGGGTGGGGCAGGAGATGTTAAAGCAGTATCAATTAAAGGGTCAGCAACTGGGTGGATACAAATGAATAGAAACTGGGGCCAGAATTGGGTGTGCAACTCATATCTCATTGGACAGAGCTTGTCTTTCATGGTCACAACCAGTGATGGTCGATCAGTTACTAGTTTTAACGTTGTGCCCGTAGGTTGGCAATTTGGACGAACTTATGAAGGTCGCCAATTTTGA 720 0.4486 MQVVPYLLFLLVCIANGTYGQWGAWQNARATFYGGPNASGTKGGACGYGDLFSYGYGIYTTALSTPLYNGGLSCGACYEVACHNDQQHCLPGSVIVTATNLCPPGGWCNPPLLHFDLSQPAFEKIGRDIAGVIPVQFRRVTCTRKGGIRFTITGNSHFNLVLITNVGGAGDVKAVSIKGSATGWIQMNRNWGQNWVCNSYLIGQSLSFMVTTSDGRSVTSFNVVPVGWQFGRTYEGRQF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3085g00018 239 Gene3D - 146 239 IPR036749 -
Gabi3085g00018 239 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Gabi3085g00018 239 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Gabi3085g00018 239 PRINTS Expansin signature 222 238 IPR002963 GO:0009664
Gabi3085g00018 239 PRINTS Expansin signature 105 122 IPR002963 GO:0009664
Gabi3085g00018 239 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Gabi3085g00018 239 PRINTS Expansin signature 122 135 IPR002963 GO:0009664
Gabi3085g00018 239 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Gabi3085g00018 239 PRINTS Expansin signature 158 179 IPR002963 GO:0009664
Gabi3085g00018 239 PRINTS Expansin signature 146 158 IPR002963 GO:0009664
Gabi3085g00018 239 Pfam Lytic transglycolase 60 137 IPR009009 -
Gabi3085g00018 239 SMART dpbb_1 60 137 IPR007112 -
Gabi3085g00018 239 CDD DPBB_EXPA_N 25 142 - -
Gabi3085g00018 239 Gene3D - 12 143 IPR036908 -
Gabi3085g00018 239 Pfam Expansin C-terminal domain 148 225 IPR007117 -
Gabi3085g00018 239 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Gabi3085g00018 239 PANTHER EXPANSIN-A15 8 239 IPR002963 GO:0009664
Gabi3085g00018 239 FunFam Expansin 147 239 - -
Gabi3085g00018 239 SUPERFAMILY PHL pollen allergen 144 236 IPR036749 -
Gabi3085g00018 239 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Gabi3085g00018 239 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Gabi3085g00018 239 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Gabi3085g00018 239 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Gabi3085g00018 239 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Gabi3085g00018 239 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Gabi3085g00018 239 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Gabi3085g00018 239 SUPERFAMILY Barwin-like endoglucanases 8 165 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3085g00018 Gabi-Chr3085 171580 172631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3085g00018 1 239 Expansin Gene Family AT2G03090 60.324 1.66e-106 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3085g00018 - K20628 pvy:116122918 347.821