Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3085g00009 ATGGGATGTTTCACTGTCTTAAAGAGCAAGAAGAAAAAATCTGATCAAATAATGTACCGAAAACGTGTTTGCCATAATGAGCATGTTCCTACAGTTCTGCCTGAACCTCAAGCTCACTCTCGCTCATTGCAGTCTGCACCTCCTAGTTTTAGGACTCGAGTGAAATCCATTCACCCCATTAACAAAGTTAACAACAACAGAACAAGGGCATTATCTGCTCCATCAGCTCTTGATGCAGCAGAACAAGATGCTTTGGCCTCAGTTGAGTATGAGGAACAAGAAGAATCAAAACAGCGAACCGGATCAATGAAGGAGCAGCGTTCACCTAGTCCACAGCCTTTACCTCTTCCATCTCCTCAGGGCAGTGGTGCATTGAAGGCTTCTAGCAGCTTTAAGTCAGGGACTGCTAGTGGTCCTCTATATGCTTCTGGACCTTTACCTCTTCCACCTATTGGATTGCTTCGAAACTTTCAGTATGAGGAAATTGCTGCTGCTTGCCACAATTTCTCTTCGGATCGATGCATGTCAGAATGTCTTTCTTCCACCATATATAAAGCTTCCTTTGGCGATGATGCTTCAAGTTCAAAGAAGTTTGAAGCCACTGTCACGCGCCTTCACCCATCAACTCAGGGCTTGAAGGAATTCATAAATGAGGTTAATACTCTTGCATCTTTACAACATCCAAACGTCTGTAAATTGCTAGGATTTCATGCACGTGATGGCTCTGAACCGAGGATGTTGGTTTATGAAAGGCTATGCCATGGAAGCTTGGACCGCCTGTTGTTTGGGAGATTTGGTGGCCCACCTATTGATTGGAACTCAAGAATGAAAATTGCCATATGTGCTGCACGAGGTCTTACTTTCTTGCATGAAGAAGGGCCTTTCCAGGCAATGTATAATGAATTTTCAACAGCCAACATACAGATTGACAAGGATTTCAGTGCAAAGCTTTCGGGGTATGGTTGTGTTGGACATATTCCAGAGGAAGAGATTTCAAGCAGTTCATCTGCTGTTGGAAACCTATCAGTGGAGACACTGGAAAGAGGAATGCTTACTCCAAAGAGCAATGTATGGAGTTTTGGAATTGTTCTTCTAGAGCTACTTACTGGCAGAAAGAATGATGATATCTATTACCCCAAGCAAGAGAGGAACTTAGTGAAGTGGACCCGTCCCTTCCTGGCTGATGATCTTAGACTATCATTGATTATGGATCCTCAACTTAAGGGTAGGTTTCCTTCCAAAGCAGCAAGAAAAGTAGCTGACATTGCACAAAGATGCCTTCAAAAGGAGCCATCAGAAAGGCCTACCATGAGAACTGTTGTTGAGCATCTCAAAATGATTCAGGATATGAAGTACTCTTGTTGGTTCCCACTACAAGAGCCAGCATCCAACTATGGAAAAGAAATGTCAAGATCACCAAGTCTTAATGGTATCATATGTCACACACCTAGATTGAGTCTTTCTATATCACCATCATTTGTAGCTAGACCATGTGTTTCACCTCCAAGATGGTCTGGTGTGCCAACCTTGCTTCCTCTTCTCGCTTGTTCCTCACACCAAGCAAGAATTCATCATCCTCAGTATCTAGGAGAGCTAGTGTTGAAGGATATTGATTGTCTATAA 1623 0.4307 MGCFTVLKSKKKKSDQIMYRKRVCHNEHVPTVLPEPQAHSRSLQSAPPSFRTRVKSIHPINKVNNNRTRALSAPSALDAAEQDALASVEYEEQEESKQRTGSMKEQRSPSPQPLPLPSPQGSGALKASSSFKSGTASGPLYASGPLPLPPIGLLRNFQYEEIAAACHNFSSDRCMSECLSSTIYKASFGDDASSSKKFEATVTRLHPSTQGLKEFINEVNTLASLQHPNVCKLLGFHARDGSEPRMLVYERLCHGSLDRLLFGRFGGPPIDWNSRMKIAICAARGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSVETLERGMLTPKSNVWSFGIVLLELLTGRKNDDIYYPKQERNLVKWTRPFLADDLRLSLIMDPQLKGRFPSKAARKVADIAQRCLQKEPSERPTMRTVVEHLKMIQDMKYSCWFPLQEPASNYGKEMSRSPSLNGIICHTPRLSLSISPSFVARPCVSPPRWSGVPTLLPLLACSSHQARIHHPQYLGELVLKDIDCL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3085g00009 540 SUPERFAMILY Protein kinase-like (PK-like) 148 456 IPR011009 -
Gabi3085g00009 540 MobiDBLite consensus disorder prediction 37 51 - -
Gabi3085g00009 540 PANTHER OS01G0588500 PROTEIN-RELATED 97 448 - -
Gabi3085g00009 540 Gene3D Phosphorylase Kinase; domain 1 152 250 - -
Gabi3085g00009 540 Gene3D Transferase(Phosphotransferase) domain 1 252 455 - -
Gabi3085g00009 540 Pfam Protein tyrosine and serine/threonine kinase 182 444 IPR001245 GO:0004672|GO:0006468
Gabi3085g00009 540 MobiDBLite consensus disorder prediction 30 131 - -
Gabi3085g00009 540 ProSiteProfiles Protein kinase domain profile. 169 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3085g00009 540 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3085g00009 Gabi-Chr3085 90324 94113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3085g00009 144 448 Receptor kinase-like Gene Family AT4G02010 38.710 7.10e-59 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Gabi3085g00009 PK_Tyr_Ser-Thr 7.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3085g00009 - - gmx:100809117 831.247