Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3085g00006 ATGGAGTCAAAAAGTTGCATGAACGTGGCATGCGCCACCTCAACGTCGATTCGGTGGCGCAAAGGTTGGGCCCTGCGATCCGGCGATTTCGCCGATCTCTGTGATAAGTGCGGTTCTGCTTATGAGCAATCAACGTTTTGTGATATGTTCCACTCAAACGATTCTGGTTGGAGAGAGTGCACTTCATGTGGCAAGCGTCTCCATTGCGGATGCATTGCTTCTAAGTCTCAGCTTGAATTACTAGATACCTGTGGTGTAAGCTGTATAAACTGCACAAGTAATTCAGGACTTCAACCCATTGCAAGCAATGAAAAGTCTAATGGATCTGGGATATTGAAGGTAAAAAATATCAGTGCACAGCAGTGCACATCTCTGGCTAACCAAATAAATGTGAAGGGTATGCAAGGAGGACATTATGCAGAGAATGATGGACTGAGGTGCTGGCTCAAACCTCATAATGTTGATGCAAATGGGCCTTATACAGAAGTGAAACCAGAAGTAGTTTTGCCTGCTGTTGGAGAACTTGGAAGCACTTTGGTATCACAATTTCTTCGTGAGTCTAATGGATCATCTAAGGCTGCCAAAGTAGAGAACTGTAAGACAGATACTGAAATGCGAGATATATATGAATCTTTGGCACAGACAAATCTGAGTATGACCCTTGCTGCTCCTTTAGGAAATTCAAACCCCTTTCATAGTGCCCTTGTTGATGAAAGGGAACAAAGTAAAACATCACCTTCACTTCTATTGGGGTCCAGCTCTCGCCATCTTTTACCTAAGCCCCCGAGGTCAACTCTTGCAACGGGATTAGAAACAAATGTAGGCATGATGTCCCAGATTCGAGTAGCAAGGCCTCCTGCTGAAGGACGGGGAAGGAATCAGTTGCTTCCACGTTATTGGCCTAGGATTACAGATCAAGAGTTGCAGCAAATATCAGGAGATTCAAATTCCACCATTGTGCCACTATTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTCTACCAAAAGCATGTGCTGAAGCATATTTCCCTCATATCTCTCAACCAGAGGGTCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTGGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGAACCTGAGGGGAAACTTATAATGGGGTATAGGAAGGCTACAAATTCTGCTGCAATACAGGAAAGACTTCTGTCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACTTGTATTAAGTGGTTACTCTGACCTTCTTCAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGCGCTGTCTAGAAATTGGAACTCAGCTGGTGGTGACATGAATTGGCATAATATTGACATGCCTGAAAACAGGAAAAGAGAGGGATTGCCTTTGCCACCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAGCTTACTTGGGAAGAGGCTCAGGATTTGCTCCGTCCACCTCCAACAGTTAAGCCAAGCATTGTCATGATTGAGGATCATGTATTCGAAGAATATGAAGAACCTCCTGTCTTTGGAAAGAGGAGTATATTCGTTGTCCGATCAACCGGGATAAATGAGCAGTGGACAGAGTGTGATAATTGCTCAAAATGGCGGAAGTTGCCAGTTGATGTACTTATTCCCCCTAAGTGGACATGTGCGGAAAATTTATGGGATCAGATCAGGTGTTCATGTTCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGATTGAACAAGGAATTCAAGAAACAAAGACTAGCAGCAAGCCACAGACCGGCCCTGGAACATGCATCATCTGGACTCGATGCGTTGGCAAATGCTGCTACACTTGGAGATGATGCAAGTGACTGCGGCAGTGCACCAGTCGTTACCACTACAAAACACCCTCGGCATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAAGGCAAACACAAACCTACATGCACATGCAATGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAAAAGAAGCGTCAATCTGAACGTGAAGCGGAGATTGCTCAGAGAAATCAGCTATCATGGCGTACCAAGGATGAATCAGAAGTAGACAGCACCTCTCGACATTTAACTCCAGTTGATGGTTGGGAGAATGAAGCAAGGGTGCCAGATGAGTTGGATTCAAGGAGTCAAGACCATGTGGCTGAAGCTGCCAAGGGACAATTAGACTTGAATTGCCAACCTGATCGAGAAGACATGCAGGCTGGGCCAAACAGTGTAAGCATGATGAGTCTTCTTGAAGAAGCAAATCTCCCGTTGGACACTTACCTGAAGCAAAATGGTCTTTCTAGTTTGATATCGGAACAGCAAACAAATTCAGCTTCAAATGTGCAGGCAGAGACAACCAATGAGAGTGAGGGAAGACATAATGAGAATTGCCATAATACTGCTTCTGCTGTTCAGGAACAAGAAAGCAGTCCTGAAGAGAACAGTGAGCAAGATAAAGGCCAAAACAATTCACTCGCATGA 2730 0.4425 MESKSCMNVACATSTSIRWRKGWALRSGDFADLCDKCGSAYEQSTFCDMFHSNDSGWRECTSCGKRLHCGCIASKSQLELLDTCGVSCINCTSNSGLQPIASNEKSNGSGILKVKNISAQQCTSLANQINVKGMQGGHYAENDGLRCWLKPHNVDANGPYTEVKPEVVLPAVGELGSTLVSQFLRESNGSSKAAKVENCKTDTEMRDIYESLAQTNLSMTLAAPLGNSNPFHSALVDEREQSKTSPSLLLGSSSRHLLPKPPRSTLATGLETNVGMMSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPHISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMEPEGKLIMGYRKATNSAAIQERLLSNMPNGSHSSETSYSGVYENLLVLSGYSDLLQSQKGCSETHLNALSRNWNSAGGDMNWHNIDMPENRKREGLPLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSIVMIEDHVFEEYEEPPVFGKRSIFVVRSTGINEQWTECDNCSKWRKLPVDVLIPPKWTCAENLWDQIRCSCSAPNELNPRELDNLLRLNKEFKKQRLAASHRPALEHASSGLDALANAATLGDDASDCGSAPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWRTKDESEVDSTSRHLTPVDGWENEARVPDELDSRSQDHVAEAAKGQLDLNCQPDREDMQAGPNSVSMMSLLEEANLPLDTYLKQNGLSSLISEQQTNSASNVQAETTNESEGRHNENCHNTASAVQEQESSPEENSEQDKGQNNSLA 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3085g00006 909 MobiDBLite consensus disorder prediction 742 786 - -
Gabi3085g00006 909 MobiDBLite consensus disorder prediction 855 909 - -
Gabi3085g00006 909 ProSiteProfiles B3 DNA-binding domain profile. 323 424 IPR003340 GO:0003677
Gabi3085g00006 909 MobiDBLite consensus disorder prediction 879 909 - -
Gabi3085g00006 909 ProSiteProfiles Zinc finger CW-type profile. 588 638 IPR011124 GO:0008270
Gabi3085g00006 909 Gene3D - 301 428 IPR015300 -
Gabi3085g00006 909 Pfam B3 DNA binding domain 323 421 IPR003340 GO:0003677
Gabi3085g00006 909 MobiDBLite consensus disorder prediction 855 870 - -
Gabi3085g00006 909 SMART B3_2 323 423 IPR003340 GO:0003677
Gabi3085g00006 909 SUPERFAMILY DNA-binding pseudobarrel domain 320 422 IPR015300 -
Gabi3085g00006 909 Gene3D - 591 647 - -
Gabi3085g00006 909 MobiDBLite consensus disorder prediction 237 266 - -
Gabi3085g00006 909 Pfam CW-type Zinc Finger 594 635 IPR011124 GO:0008270
Gabi3085g00006 909 FunFam B3 domain-containing transcription repressor VAL1 301 428 - -
Gabi3085g00006 909 CDD B3_DNA 321 422 IPR003340 GO:0003677
Gabi3085g00006 909 MobiDBLite consensus disorder prediction 760 774 - -
Gabi3085g00006 909 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3085g00006 Gabi-Chr3085 64090 77038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3085g00006 1 891 B3 DNA Binding Superfamily AT4G32010 50.167 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3085g00006 B3 3.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3085g00006 K09287 - gmx:100778833 1605.88