Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3085g00005 ATGATGCAAGTGCAATTCATCCTATTCCTGTTTCTTGTTCTTTTTGGGCCACTTTTTGTGACCTCATTAGACTCAGCTTTCAACGATGATATTATGGGGTTGATTGTGTTCAAAGCTGGTCTAGAAGATCCAAAAGGTAAACTTTCTACATGGAATGAAGATGATTATAGTCCCTGCAATTGGGTTGGTGTCAAATGTGACCCTGCAACCAATAGGGTCTATGCTCTTGTCCTTGATGGATTCTCTCTTTCTGGGCATATTGATAGAGGGCTTTTGAGATTGCAATTCCTTCAAATTTTGTCTCTTTCTAGGAATAACTTGACAGGGACCATAAACCCTGATTTTCATAGCCTTTGGAATTTACAAGTTGTTGATTTGAGTGAGAACAACCTTGTTGGGTCAATCCCAGATGGGTTTTTCCAGCAATGTTGGTCTCTAAGAGTAGTATCATTTGCCAAAAACAACCTTACAGGTAAGATTCCTGATTCTTTGAGCTCTTGCTTCTCATTGGCAAATTTGAACTTTTCCTCTAATCAGCTACAAGGGGAATTACCATCTTGGATGTGGTATTTGAGGGGACTGCAGTCACTTGATCTTTCAAATAACTTGCTGGAGGGAGAGATTCCTGAAGGAATTCAAAGTCTATATGATTTGAAGGTGTTAAGGCTAGGAAAGAATAGTTTCACTGGTTGGCTTCCTGGAGATATTGGAGGCTGCATGCTTTTGAAGTCCATTGATTTCAGTGATAATTTTCTCTCTGGGAAGCTTCCTGATTCAATACAAAGACTCACCTCATGCACATCCCTTAGTTTGCAAGGGAATTTATTCACAGGAGGCATTCCAAATTGGATTGGAGAATTGAAAAGTCTAGAGATGTTGGATCTTTCTGCAAATAGATTTTCTGGTTGGATTCCAAAATCAATAGGAAACCTTGACTTGCTGAGTAGATTAAATCTCTCCAGGAATCAGATCACAGGAAACTTGCCAGAGTCAATGGTAAACTGCATTATGCTTTTGACTCTTGACATCAGCCACAATCACTTATCAGGCCTTCTTCCTTCATGGATATTTAGGATGGGTTTACAAAGTACCTTGCTTTCTGGGAACAGCTTCAGTAACAGCCGTTATCCTTCACTTACTTCCTTACCTGTATCTTATCATGGTCTTCAAGTTTTGGATTTGTCATCAAATGCATTTTCTGGTGAACTTCCATCTGGCATTGGAGGTCTTAGTAGCTTGCAAGTCTTAAATTTGTCCTCCAACAATATCTCTGGTTCTATTCCATTGAGTATAGGAGAGCTTAAATTTTTGTACATTCTTGACTTAAGTGATAACAAGCTTAATGGAAGCATTCCTTCTGAAATAGAAGGGGCAATTTCACTTAGTGAACTGAAGCTACAGAAGAACTTCTTAGGTGGGAGAATTCCAAGCCAAATTAAGAAATGTTCAGCCCTAAACTCTTTGAACCTTTCTCACAACAAGCTTATTGGTTCAATCCCTTCACCCATTGCAAACCTAACCAATCTTCAGTATGTAGATTTGTCATGGAATGAACTCTCTGGAAGCTTACCCAAGGAGCTGACAAATCTTTCCCAACTTTTAACATTTAACGTTTCATACAACCACCTTCAAGGTGAGCTACCAAGTGGTGGCTTCTTCAATACCATCTCTCCTTCATATCTATCTGGTAATCCATTGTTATGTGGTTCTGTTGTTAATCACTCTTGCCCACCTTTCCATCCAAAACCTCTAGTCCTAAACCCCAATTCTTCTTATTCCAACTCAAGAACTTCCTTACATAATCTTCATCATAAGGTCATGCTCAGTATCTCTGTCCTTATTGCTATTGGTGCAGCTATTTTTATTGCCATTGGTGTGGTGGTTGTTATTGTCCTAAATATCCATGTGCAGTCTTCAATGTCACGTTCTGCTGCTCCATTTGCATTCACTGGTGGTGAGGACTATAATTGTTCACCTGCAAATGATCCAAACTATGGAAAGCTTGTGATGTTTTCTGGTGATGCTGACTTTGCTGATGGGGCTCATAATCTTCTTAACAAAGGCAATGAAATTGGTCGTGGTGGATTTGGAGTTGTTTATTGCACTGTCCTTCAAGATGGGAATTGTGTTGCAATCAAGAAGCTTACAGTGTCTGGTTTTATCAAGTCCCAAGAAGACTTTGAGAGAGAGGTTAATAAGCTTGGGAAGATTAGGCACCAGAATCTTGTGGCACTTGAAGGTTATTATTGGACTTCATCCTTGCAACTCCTTATTTATGAGTACATAGCTAGAGGGAGTTTGCACAAGCTTCTACATGATGATAATAGCAAAATTGTCCTTTCTTGGCAACAAAGGTTCAAGATTATTCTTGGAATGGCAAAAGGGTTGGCATATTTGCACCAAATGAACATAATCCATTATAATCTAAAATCAACTAATGTTTTGATTGATTGTTCTGATGAGGCAAAAATAGGAGATTTTGGTTTGGTGAGGCTATTGCCAATGCTAGAGCATTGCATTTTGAGTAGCAAAATTCAAAGTGCACTTGGATACATGGCTCCTGAGTTTGCTTGCCTCACAGTTAAGGTAACTGAAAAATGTGATATATATGGTTTTGGAATCCTGGTCCTGGAGGTGGTGACAGGAAAAAGACCTGTGGAATATATGGAGGATGATGTGGTTGTTCTCTGTGACATGGTGAGAGGTGCATTGGAGGGTGGCAAGGTAGAGCAATGTGTTGATGAGAAGCTTTTGGGTAATTTTGCTGCAGAGGAAGCAATTCCTGTGATGAAATTGGGGTTAGTTTGTGCATCACAAGTACCATCAAACCGTCCTGATATGGCTGAGGTAGTCAACATATTAGAGTTGATACAATGCCCTTCAGAAGGATAA 2892 0.3959 MMQVQFILFLFLVLFGPLFVTSLDSAFNDDIMGLIVFKAGLEDPKGKLSTWNEDDYSPCNWVGVKCDPATNRVYALVLDGFSLSGHIDRGLLRLQFLQILSLSRNNLTGTINPDFHSLWNLQVVDLSENNLVGSIPDGFFQQCWSLRVVSFAKNNLTGKIPDSLSSCFSLANLNFSSNQLQGELPSWMWYLRGLQSLDLSNNLLEGEIPEGIQSLYDLKVLRLGKNSFTGWLPGDIGGCMLLKSIDFSDNFLSGKLPDSIQRLTSCTSLSLQGNLFTGGIPNWIGELKSLEMLDLSANRFSGWIPKSIGNLDLLSRLNLSRNQITGNLPESMVNCIMLLTLDISHNHLSGLLPSWIFRMGLQSTLLSGNSFSNSRYPSLTSLPVSYHGLQVLDLSSNAFSGELPSGIGGLSSLQVLNLSSNNISGSIPLSIGELKFLYILDLSDNKLNGSIPSEIEGAISLSELKLQKNFLGGRIPSQIKKCSALNSLNLSHNKLIGSIPSPIANLTNLQYVDLSWNELSGSLPKELTNLSQLLTFNVSYNHLQGELPSGGFFNTISPSYLSGNPLLCGSVVNHSCPPFHPKPLVLNPNSSYSNSRTSLHNLHHKVMLSISVLIAIGAAIFIAIGVVVVIVLNIHVQSSMSRSAAPFAFTGGEDYNCSPANDPNYGKLVMFSGDADFADGAHNLLNKGNEIGRGGFGVVYCTVLQDGNCVAIKKLTVSGFIKSQEDFEREVNKLGKIRHQNLVALEGYYWTSSLQLLIYEYIARGSLHKLLHDDNSKIVLSWQQRFKIILGMAKGLAYLHQMNIIHYNLKSTNVLIDCSDEAKIGDFGLVRLLPMLEHCILSSKIQSALGYMAPEFACLTVKVTEKCDIYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEGGKVEQCVDEKLLGNFAAEEAIPVMKLGLVCASQVPSNRPDMAEVVNILELIQCPSEG 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3085g00005 963 PRINTS Leucine-rich repeat signature 410 423 - -
Gabi3085g00005 963 PRINTS Leucine-rich repeat signature 338 351 - -
Gabi3085g00005 963 SMART LRR_typ_2 311 335 IPR003591 -
Gabi3085g00005 963 SMART LRR_typ_2 118 142 IPR003591 -
Gabi3085g00005 963 SMART LRR_typ_2 191 214 IPR003591 -
Gabi3085g00005 963 SMART LRR_typ_2 410 434 IPR003591 -
Gabi3085g00005 963 SMART LRR_typ_2 215 238 IPR003591 -
Gabi3085g00005 963 SMART LRR_typ_2 287 310 IPR003591 -
Gabi3085g00005 963 SMART LRR_typ_2 506 529 IPR003591 -
Gabi3085g00005 963 SMART LRR_typ_2 530 554 IPR003591 -
Gabi3085g00005 963 SMART LRR_typ_2 94 117 IPR003591 -
Gabi3085g00005 963 Pfam Leucine Rich Repeat 242 263 IPR001611 GO:0005515
Gabi3085g00005 963 Pfam Leucine Rich Repeat 97 118 IPR001611 GO:0005515
Gabi3085g00005 963 Pfam Leucine Rich Repeat 194 215 IPR001611 GO:0005515
Gabi3085g00005 963 ProSiteProfiles Protein kinase domain profile. 685 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3085g00005 963 Pfam Leucine rich repeat 120 180 IPR001611 GO:0005515
Gabi3085g00005 963 Pfam Leucine rich repeat 460 519 IPR001611 GO:0005515
Gabi3085g00005 963 Pfam Leucine rich repeat 388 447 IPR001611 GO:0005515
Gabi3085g00005 963 Pfam Leucine rich repeat 267 324 IPR001611 GO:0005515
Gabi3085g00005 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 28 954 - -
Gabi3085g00005 963 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 307 580 - -
Gabi3085g00005 963 Gene3D Ribonuclease Inhibitor 28 305 IPR032675 -
Gabi3085g00005 963 SMART LRR_sd22_2 506 532 - -
Gabi3085g00005 963 SMART LRR_sd22_2 191 214 - -
Gabi3085g00005 963 SMART LRR_sd22_2 410 431 - -
Gabi3085g00005 963 SMART LRR_sd22_2 434 457 - -
Gabi3085g00005 963 SMART LRR_sd22_2 287 313 - -
Gabi3085g00005 963 SUPERFAMILY L domain-like 288 556 - -
Gabi3085g00005 963 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 762 963 - -
Gabi3085g00005 963 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 28 306 - -
Gabi3085g00005 963 ProSiteProfiles Leucine-rich repeat profile. 412 435 IPR001611 GO:0005515
Gabi3085g00005 963 SUPERFAMILY Protein kinase-like (PK-like) 685 958 IPR011009 -
Gabi3085g00005 963 Gene3D Phosphorylase Kinase; domain 1 674 761 - -
Gabi3085g00005 963 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 679 761 - -
Gabi3085g00005 963 Gene3D Transferase(Phosphotransferase) domain 1 762 961 - -
Gabi3085g00005 963 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Gabi3085g00005 963 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Gabi3085g00005 963 Pfam Protein kinase domain 687 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3085g00005 963 SUPERFAMILY L domain-like 45 375 - -
Gabi3085g00005 963 Gene3D Ribonuclease Inhibitor 306 580 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3085g00005 Gabi-Chr3085 39505 42545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3085g00005 7 962 Receptor kinase-like Gene Family AT5G01890 60.644 0.0 1124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Gabi3085g00005 Pkinase 3.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3085g00005 - - gmx:100791204 1543.1