Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi3085g00003 | ATGAATCAGTGTGTTCCTAACTGGGATTTGGAAGACAATAGTCCCACAACAACAAGAGTCCCTCTTCTTTCAAACTCCAATCACATTTCCCTTCATATTCCCATGTTGGACCATGAAAATGGGCGACTTTCCATGCATGGTTTAGGACCGCCGCCGAAGCTTCTTAAAGCCGGTAACACAGGAAACCCTACAACATGGGACAAACCTCGTACAAGTGGCACCTTGGAGTCCATATTCAACCAACATGTTGGTGTCGGTGTCGGTGTCGGTGGTGGTTGTGGGAACGAGTTGGTTCCGTGGCTTGATTGCCGAAGTGCTACGGCGGCGACCGCCACCGCAAACGAGGTGACTACGGACGCCTTAGTGCCGTGCTCCAATTGTATGGAGGAGCAGAGCAATATGAAGCAGGCTATGGAGATGGGAAGGGTTGGCGCGTGCACGGCACGTGTGGGGTCATGCAGTGGAGCTGCAACTAAAGAGTGCGACGGTTACCTCGTCGGAAATCAAGCCGGGGCGGTGGCGCGTGTGGCTATATCGCAAGAATTGAGTGGCTGCAGGGATCGGAGTGTGAGTGGCAGTGCCACTAGCCACATGGCCTTGTGTGTAGATTCGCCGGAAAACACCACCAGCTCCGGCAGGCAGGGCACGAGGACCACCAACAACGACGGCCACGATTCCATTAGCCACCGTAGTTCACAGAGGGAGGCACGGGATGAGGCTAACAAGACCAAAAGCATAGAGAGATGTTCAGTGTCCACAAAAAGAAACAGAGCTGCAGCTATACACAACCAATCTGAAAGGAAAAGGAGAGATAAGATAAACCAAAGAATGAAGGAATTGCAAAAGCTGGTCCCAAATTCCAATAAGACTGATAAAGCTTCGATGCTGGATGAAGTGATAGAATATCTGAAGCAATTGCAAGCGCAAGTTCAAATAATGAATTGGATGAAAATGTCCTTAATGATGCTGCCAATTACCATGCAACAACAACAACTTAAAATGGCTATGATGGCTCAGATGGGCATTGGGATGGGGATGGGTATGGGAATGAACAACATGAACATTCCGGCAATCCCTCCTGTCCTCCACCCTAATCCCTTCATGCCTATGCCCTCATGGGATGCCTGCGGTGGCGATCAAATGCAAGGAGCACCAACCACGGATTAA | 1167 | 0.5021 | MNQCVPNWDLEDNSPTTTRVPLLSNSNHISLHIPMLDHENGRLSMHGLGPPPKLLKAGNTGNPTTWDKPRTSGTLESIFNQHVGVGVGVGGGCGNELVPWLDCRSATAATATANEVTTDALVPCSNCMEEQSNMKQAMEMGRVGACTARVGSCSGAATKECDGYLVGNQAGAVARVAISQELSGCRDRSVSGSATSHMALCVDSPENTTSSGRQGTRTTNNDGHDSISHRSSQREARDEANKTKSIERCSVSTKRNRAAAIHNQSERKRRDKINQRMKELQKLVPNSNKTDKASMLDEVIEYLKQLQAQVQIMNWMKMSLMMLPITMQQQQLKMAMMAQMGIGMGMGMGMNNMNIPAIPPVLHPNPFMPMPSWDACGGDQMQGAPTTD | 388 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi3085g00003 | 388 | CDD | bHLH_AtPIF_like | 257 | 321 | IPR047265 | - | |
Gabi3085g00003 | 388 | MobiDBLite | consensus disorder prediction | 198 | 272 | - | - | |
Gabi3085g00003 | 388 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 255 | 321 | IPR036638 | GO:0046983 | |
Gabi3085g00003 | 388 | MobiDBLite | consensus disorder prediction | 223 | 251 | - | - | |
Gabi3085g00003 | 388 | Coils | Coil | 263 | 283 | - | - | |
Gabi3085g00003 | 388 | PANTHER | TRANSCRIPTION FACTOR PIF1-RELATED | 38 | 369 | IPR031066 | - | |
Gabi3085g00003 | 388 | FunFam | transcription factor UNE10 isoform X1 | 252 | 317 | - | - | |
Gabi3085g00003 | 388 | Gene3D | - | 252 | 317 | IPR036638 | GO:0046983 | |
Gabi3085g00003 | 388 | SMART | finulus | 263 | 312 | IPR011598 | GO:0046983 | |
Gabi3085g00003 | 388 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 257 | 306 | IPR011598 | GO:0046983 | |
Gabi3085g00003 | 388 | Pfam | Helix-loop-helix DNA-binding domain | 262 | 307 | IPR011598 | GO:0046983 | |
Gabi3085g00003 | 388 | MobiDBLite | consensus disorder prediction | 198 | 222 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi3085g00003 | Gabi-Chr3085 | 26201 | 31255 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi3085g00003 | 1 | 385 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G00050 | 44.169 | 6.56e-63 | 204 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Gabi3085g00003 | HLH | 3.1e-14 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi3085g00003 | - | - | cave:132188831 | 308.531 |