Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3085g00003 ATGAATCAGTGTGTTCCTAACTGGGATTTGGAAGACAATAGTCCCACAACAACAAGAGTCCCTCTTCTTTCAAACTCCAATCACATTTCCCTTCATATTCCCATGTTGGACCATGAAAATGGGCGACTTTCCATGCATGGTTTAGGACCGCCGCCGAAGCTTCTTAAAGCCGGTAACACAGGAAACCCTACAACATGGGACAAACCTCGTACAAGTGGCACCTTGGAGTCCATATTCAACCAACATGTTGGTGTCGGTGTCGGTGTCGGTGGTGGTTGTGGGAACGAGTTGGTTCCGTGGCTTGATTGCCGAAGTGCTACGGCGGCGACCGCCACCGCAAACGAGGTGACTACGGACGCCTTAGTGCCGTGCTCCAATTGTATGGAGGAGCAGAGCAATATGAAGCAGGCTATGGAGATGGGAAGGGTTGGCGCGTGCACGGCACGTGTGGGGTCATGCAGTGGAGCTGCAACTAAAGAGTGCGACGGTTACCTCGTCGGAAATCAAGCCGGGGCGGTGGCGCGTGTGGCTATATCGCAAGAATTGAGTGGCTGCAGGGATCGGAGTGTGAGTGGCAGTGCCACTAGCCACATGGCCTTGTGTGTAGATTCGCCGGAAAACACCACCAGCTCCGGCAGGCAGGGCACGAGGACCACCAACAACGACGGCCACGATTCCATTAGCCACCGTAGTTCACAGAGGGAGGCACGGGATGAGGCTAACAAGACCAAAAGCATAGAGAGATGTTCAGTGTCCACAAAAAGAAACAGAGCTGCAGCTATACACAACCAATCTGAAAGGAAAAGGAGAGATAAGATAAACCAAAGAATGAAGGAATTGCAAAAGCTGGTCCCAAATTCCAATAAGACTGATAAAGCTTCGATGCTGGATGAAGTGATAGAATATCTGAAGCAATTGCAAGCGCAAGTTCAAATAATGAATTGGATGAAAATGTCCTTAATGATGCTGCCAATTACCATGCAACAACAACAACTTAAAATGGCTATGATGGCTCAGATGGGCATTGGGATGGGGATGGGTATGGGAATGAACAACATGAACATTCCGGCAATCCCTCCTGTCCTCCACCCTAATCCCTTCATGCCTATGCCCTCATGGGATGCCTGCGGTGGCGATCAAATGCAAGGAGCACCAACCACGGATTAA 1167 0.5021 MNQCVPNWDLEDNSPTTTRVPLLSNSNHISLHIPMLDHENGRLSMHGLGPPPKLLKAGNTGNPTTWDKPRTSGTLESIFNQHVGVGVGVGGGCGNELVPWLDCRSATAATATANEVTTDALVPCSNCMEEQSNMKQAMEMGRVGACTARVGSCSGAATKECDGYLVGNQAGAVARVAISQELSGCRDRSVSGSATSHMALCVDSPENTTSSGRQGTRTTNNDGHDSISHRSSQREARDEANKTKSIERCSVSTKRNRAAAIHNQSERKRRDKINQRMKELQKLVPNSNKTDKASMLDEVIEYLKQLQAQVQIMNWMKMSLMMLPITMQQQQLKMAMMAQMGIGMGMGMGMNNMNIPAIPPVLHPNPFMPMPSWDACGGDQMQGAPTTD 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3085g00003 388 CDD bHLH_AtPIF_like 257 321 IPR047265 -
Gabi3085g00003 388 MobiDBLite consensus disorder prediction 198 272 - -
Gabi3085g00003 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 321 IPR036638 GO:0046983
Gabi3085g00003 388 MobiDBLite consensus disorder prediction 223 251 - -
Gabi3085g00003 388 Coils Coil 263 283 - -
Gabi3085g00003 388 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 38 369 IPR031066 -
Gabi3085g00003 388 FunFam transcription factor UNE10 isoform X1 252 317 - -
Gabi3085g00003 388 Gene3D - 252 317 IPR036638 GO:0046983
Gabi3085g00003 388 SMART finulus 263 312 IPR011598 GO:0046983
Gabi3085g00003 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 257 306 IPR011598 GO:0046983
Gabi3085g00003 388 Pfam Helix-loop-helix DNA-binding domain 262 307 IPR011598 GO:0046983
Gabi3085g00003 388 MobiDBLite consensus disorder prediction 198 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3085g00003 Gabi-Chr3085 26201 31255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3085g00003 1 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 44.169 6.56e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3085g00003 HLH 3.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3085g00003 - - cave:132188831 308.531