LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3081g00004	ATGACACAGCAAACACTACCTCATCCTTCTTCCTTCACCTGTGAATGCACTTACGATGTCTTCCTCAACTTTAGAGGTGTTGATACACGCCACAATTTCACTGGTAATCTCTACAATTCTCTTCATGAAAGGGGTATTCACACCTTCTTTGATGATGAAAGACTTAACAAAGGTGAAGAAATCACACCATCTCTTTTCCAAGCCATTCAAGATTCTAGGATTTTCATTGCTGTTCTCTCTAAGAACTATGCATCCTCTACATATTGTTTGGATGAACTAGTCATGATCCTTGAGTGCTCAAAGGCACCAGGACGGTTGTTTTGGCCTGTTTTCTATGATGTGGACCCATCACAAGTTCGGCACCAGAGTGGCACTTATGCAGAAGCTTTGGCTATACTTGAGGAGAGGTTCAAGGATGACAAGGAGAAGGTGAAAAAATGGAGGGAGGCTTTACGTCAAGCTGCTAATATGTCTGGATCTCATTTCCAACACGGTTCTCAATCAGAATATCAGTTTATTAGAAAGATTGTTGAAGAAGTCTCTAAAAAGATCAATCACAGTCTGTTGCATGTTGCTGATAAGCCGGTTGCATTAGAGTCTCGAGTGCTAGAAGTGACATCTCTCCTAGGACTCGGATCTGATGAGGGAGTCAACATGGTAGGCATTCATGGAATCGGTGGGATAGGGAAATCAACACTTGCTCGTGCTGTATATAACTTGATTGCTGATCAATTTGAAGGTTTTTGTTTCCTTGCTGACATACGAGAAAGGGCAATTAATAATCATGGTCTTGTTCAACTCCAAGAAACACTACTCTCTGAATTGCTTGGGGAGAAAGATATTAAAGTGGGAGATGTCAACAGAGGAATTCCAATAATAAAAAGGAGGCTTCAGCGAAAGAAGATCCTTTTGATTCTTGATGATGTTGACAAACCAAAGCAGTTAAAAGTAATTGCAGGAGGACGTGATTGGTTTGGCTCTGGCAGCAGGATCATAATCACAACAAGAGACAAGCATTTGCTAGCCACTCATGGGATTGTAAAATCATATGAGGTTAAACAATTGAGTGATGAAAAAGCTCTTGAATTGTTTAGTTGGCATGCTTTTAAACATAACAAAATTGATCCAGTTTACGAGGATATTTCAAAAAGTGCAGTTTCTTATGCTCACGGCCTTCCATTGGCTTTGGAGGTTATAGGTTCTAACTTGTTTGGCAAAAATCTAGCTGTATGGAAATCTACATTGGGAAAATATGAAAGAACTCCTAATAAAGAGATCCATGAAACACTTAATGTTAGCTATGATGATTTGGAAGAAGATGAGAAGGGAATTTTTCTTGATATTACTTGTTTCTTCAATTCTTACGAAATAAGCTATGTCAAAGAAATACTGTACTTACGTGGTTTTCATTCGGAAAATGGTATTCAAGCGTTGACTGACAAATCTCTCATAAAGATTGACCGCAATGGTTTTGTGAGAATGCATGACTTAATTAAAGACATGGGCAGAGAAATCGTAAGACAGGAATCAGCATCAGAGCCTGGCAGACGCAGTAGATTATGGTTTGATGAGGACATTGTTCATGTTCTAAAGGAAAATACGGGAACTGATACAATTGAAGTCATGATCATCGACTTGTGCAAAGACAAAGAAGTGCAATGGAGTGGAAAAGCCTTCAAGAAGATGAGAAACTTGAGAATTCTTATAATCAGAAATGCACGCTTCACTGGAGGTCCTCAGAATCTACCAAATTGTTTGAGAGTGCTAGACTGGAGTGGATATCCATCACCATCTTTACCATCTGACTTTAATCCTGAGAATCTTGTGATTCTTAGCCTGCCTGAAAGTTGCCTTAAATCCTTCAAATCACCCAAGGTGTTTGAGTCGTTGAACTTTATGGATTTCGAAGGTTGCAAGTTCTTAACTGAACTACCTAGCTTATCTGGAGTACCAAATTTGGGGGCACTGTGTCTTGATAACTGCACTAATTTACTTAAAATTCATGGTTCGGTTGGATTTCTTGATAGACTCGTGTTACTGAGTGCTCAAGGATGCACCCAACTAGAAATTTTGGTACCCTCCATCCACTTGACATCTCTAGAAACTCTGGATTTGAGGGGTTGTTCAAGTCTTGAGAGCTTCCCAGAAGTTTTGGGAATGATGGAGAATATAAGAGATGTTTATTTAGACCAGACTGCCATAGATGAATTGCCATTTTCAATTGGAAATCTTGTGGGGCTCCAACGATTGTTCTTGAGGGAATGCAAAAAGCTGATCCAGCTGCCAAATAGTATCCATATATTGCCTCAACTGGAGATAATAATGACTTATGGTCGAAGGGGGTTTCGATTATTTAGAGATACAGAAAAAGTGAGCTCAGAAATGTTTCCAAAAGCCATGATTGTTTATGATAAAGGCAGTACGTTGTTACTTGATGTGTATTATCACAACATAAGCCCCAATAATGTCATAGAAGTATGTACACCTTCATGGATTCGTAACTGGGATCTCTCATTGTCTGAGGATCCTGATTATGAATCCTGGTGGGATTCGGCCTTCTACAGAGAACAGGAAACGTCAATTTGTTTCTGGTTCCGAAAGAAATTCCCCAAGATAGCTCTATTTTATTTTACACAACCTGGCGTGTACGAAGACAATATGGTTTTGGATTTCATGTTCAGTGTAGTCATCAATGGCACTAAGCAATTCAGTTCTTCATGTAACTACATATTTTCCACACAAGGAATGATGACAATAGTTCTTTGCTGTGATCTACAATGCAAATTGGAGTGGGTATTTTCAGAACATGAATGGAATAAAGTAGAGATTTTTTGGGAGTTAGAATATCTCATGCCATGTGATGCTCAAAGGTTAGTTTTACCCTACATTCATGTATACAAAGAAAACGACATGGAGGTTTTCAAAAGAGAAAAACCATCTGATCTCCCCCCATCTCTCTTCCAGGAATTTCAAGAGATGTTGAGAATAAAGGAAACAAGTTAG	3003	0.3903	MTQQTLPHPSSFTCECTYDVFLNFRGVDTRHNFTGNLYNSLHERGIHTFFDDERLNKGEEITPSLFQAIQDSRIFIAVLSKNYASSTYCLDELVMILECSKAPGRLFWPVFYDVDPSQVRHQSGTYAEALAILEERFKDDKEKVKKWREALRQAANMSGSHFQHGSQSEYQFIRKIVEEVSKKINHSLLHVADKPVALESRVLEVTSLLGLGSDEGVNMVGIHGIGGIGKSTLARAVYNLIADQFEGFCFLADIRERAINNHGLVQLQETLLSELLGEKDIKVGDVNRGIPIIKRRLQRKKILLILDDVDKPKQLKVIAGGRDWFGSGSRIIITTRDKHLLATHGIVKSYEVKQLSDEKALELFSWHAFKHNKIDPVYEDISKSAVSYAHGLPLALEVIGSNLFGKNLAVWKSTLGKYERTPNKEIHETLNVSYDDLEEDEKGIFLDITCFFNSYEISYVKEILYLRGFHSENGIQALTDKSLIKIDRNGFVRMHDLIKDMGREIVRQESASEPGRRSRLWFDEDIVHVLKENTGTDTIEVMIIDLCKDKEVQWSGKAFKKMRNLRILIIRNARFTGGPQNLPNCLRVLDWSGYPSPSLPSDFNPENLVILSLPESCLKSFKSPKVFESLNFMDFEGCKFLTELPSLSGVPNLGALCLDNCTNLLKIHGSVGFLDRLVLLSAQGCTQLEILVPSIHLTSLETLDLRGCSSLESFPEVLGMMENIRDVYLDQTAIDELPFSIGNLVGLQRLFLRECKKLIQLPNSIHILPQLEIIMTYGRRGFRLFRDTEKVSSEMFPKAMIVYDKGSTLLLDVYYHNISPNNVIEVCTPSWIRNWDLSLSEDPDYESWWDSAFYREQETSICFWFRKKFPKIALFYFTQPGVYEDNMVLDFMFSVVINGTKQFSSSCNYIFSTQGMMTIVLCCDLQCKLEWVFSEHEWNKVEIFWELEYLMPCDAQRLVLPYIHVYKENDMEVFKREKPSDLPPSLFQEFQEMLRIKETS	1000

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3081g00004	1000	Gene3D	-	354	438	IPR042197	-
	Gabi3081g00004	1000	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	183	448	IPR027417	-
	Gabi3081g00004	1000	SUPERFAMILY	"Winged helix" DNA-binding domain	425	531	IPR036390	-
	Gabi3081g00004	1000	SUPERFAMILY	L domain-like	544	778	-	-
	Gabi3081g00004	1000	Gene3D	-	186	348	IPR027417	-
	Gabi3081g00004	1000	Pfam	NB-ARC domain	213	435	IPR002182	GO:0043531
	Gabi3081g00004	1000	Pfam	TIR domain	18	188	IPR000157	GO:0007165
	Gabi3081g00004	1000	SUPERFAMILY	Toll/Interleukin receptor TIR domain	9	159	IPR035897	-
	Gabi3081g00004	1000	SMART	till_3	17	157	IPR000157	GO:0007165
	Gabi3081g00004	1000	Gene3D	Ribonuclease Inhibitor	531	833	IPR032675	-
	Gabi3081g00004	1000	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	783	IPR044974	GO:0006952
	Gabi3081g00004	1000	Gene3D	-	15	185	IPR035897	-
	Gabi3081g00004	1000	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	186	-	-
	Gabi3081g00004	1000	ProSiteProfiles	TIR domain profile.	16	184	IPR000157	GO:0007165
	Gabi3081g00004	1000	Coils	Coil	130	150	-	-
	Gabi3081g00004	1000	PRINTS	Disease resistance protein signature	389	403	-	-
	Gabi3081g00004	1000	PRINTS	Disease resistance protein signature	219	234	-	-
	Gabi3081g00004	1000	PRINTS	Disease resistance protein signature	695	711	-	-
	Gabi3081g00004	1000	PRINTS	Disease resistance protein signature	296	310	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3081g00004	Gabi-Chr3081	33650	37743	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3081g00004	7	790	WRKY Transcription Factor Family	AT4G12020	34.696	5.27e-103	353

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3081g00004	-		-	mtr:11441658	1299.26