Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3081g00003 ATGACACAGGAAACACTACCTCATCCTTCTTCCTTCACCTATGAATGGACTTATGATGTCTTCCTCATCTTTAGAGGTGTTGATACGCGCCACAATTTCACCGGTAATCTCTACAATTCTCTTCATGAAAGGGGTATTCACACCTTCATTGATGATGAAGGACTTAACAAAGGTGATGAAATCACACCATCTCTTCTCCAAGCCATTCAAGATTCTAGGATTTTCATTGCTGTTTTCTCTAAGAACTATGCATCATCTACATTTTGTTTGGAAGAACTTGTCATGATCCTTGAGTGCTCAAAGGCACAAGGACGGTTGTTTTGGCCTGTTTTTTATGATGTGGACCCATCACAAGTTCGGCACCAGAGTGGGACTTATGCAGAAGCTTTGGCTAAACTTGAGGAGAGGTTCAAAGATGACAAGGACAAGGACAAGGTGAAAAAATGGAGGGATGCTTTACATGAAGCTGCTAATATGTCTGGATCTCATTTCCAATTCCAACATGGTTCTCAATATGAATATCAGTTTATTAGAAATATTGTTGAAGAAGTCTCTAAAAAGATCAACCGCAGTCCGTTATATGTTGCTGATAAGCCAGTTGCATTAGATTCTCGAGTGCAAGAAGTGAAATCTCTCCTAGGACTCGGGTCTGATGAGGGAGTTAACATGATAGGCATTCATGGAACCGGTGGGATAGGGAAATCAACACTTGCTCGTGCTGTATATAACTTGATTGCTGATCAATTTGAAGGTTTTTGTTTCCTTGCTGACATACGAGAAAGGGCAATTAATAATCATGGTCTTGTACAACTCCAAGAAACACTACTCTCTGAACTGCTTGGGGAGAAAGACATTAAAGTGGGAGATGTTAACAGAGGAATTCCAATAATAAAAAGGAGGCTTCAGCGAAAGAAGATCCTTTTGATTCTTGATGATGTTGACAAACTGAAGCAGCTACAGGTAATTGCAGGAGGACAAGATTGGTTTGGCTCTGGCAGCAGGATCATAATCATAACAAGAGACAAGCATTTGCTAGTCACTCATGGGATTGTGAAATCATATGAGGTTAATGAGTTGAGTGATGATAATGCTCTTGAATTGTTTAGTTGGCATGCCTTTAAAAATAACAAAATTGATCCAATTTATAAGGATATTTCAAAACGTGCAGTTTCTTATGCTCACGGCCTTCCATTGGCTTTGGAGGTGATAGGTTCTCACTTGTTTGGCAAAAGTTTAGAGGTGTGGAAATCTGCATTGGACAAATATGAAAGAACTCCTCATAAAGAGATCCATGAAACACTTAAAGTTAGCTATGATGATTTGGAAGAAGATGAGAAGGGGATTTTTCTTGACATTGCTTGTTTCTTCAATTCTTACGAAATACGCTATGTCAAACAAATACTATACTTACATGGCTTTCATGAGGAAAATGGAATTCAAGTGTTGACTGACAAATCTCTCGTGAAGATTGACCGCAATGGTTTCGTGAGGATGCATGATTTAATTCAGGACATGGGCAGAGAAATCGTTAAGCGGGAATCAACATTGGAGGCTGGCAGACGCAGTAGATTATGGTTAAACGAAGACATTGTTCATGTTTTGGAAGATGATACGGGAACTGATACAATTGAAGCCATAATCATGAACTTGTGCAAAAACAAAGAAGTGCAGTGGAGTGGAAAAGCCTTCGAGAAGATGAAAAACCTGAGAATTCTTATAATCAGAGATGTACGCTTTTCTAGAGGACCTCAGAATCTACCAAATATTTTGAGAGTGCTTGATTGGAGCGGGTATCCATCGCTGTCTTTACCATCTGATTTTAATCCAAAGAATCTTGTGATACTTAGTCTGCCTGAAAGTTGCCTTAGATCATTTAAACCACTCAAGGTGTTTGAGTCGTTGAACTTTATGGATTTTGAAGGTTGCAAGTTCTTAACTGAGCTACCTAGCTTATCTGGAGTACCAAATTTGGGGGCACTGTGTCTTGATAACTGCACTAATTTACTTAAAATTCATGGTTCGGTTGGATTTCTTGATAGACTCGTGTTACTGAGTGCTCAAGGATGCACCCAACTAGAAATTTTGGTACCCTCCATCCACTTGACATCTCTAGAAACTCTGGACTTGAGGGGCTGTTCAAGTCTTGAGAGCTTCCCAGATGTTTTGGGAATGATGGAGAATATAAGAGATGTTTATTTAGACCAGACTGCCATAGATGAATTGCCATTTTCAATTGGAAATCTTGTGGGGCTCCAACGATTGTACTTGAGGGAATGCAAAAAGCTGATCCAGCTGCCAAATAGTATCCATATATTGCCTCAACTGGAGACAATAATGACTTATGGTCGCAGGGGTTTCCGATTATTTGAAGATACAGAAAAAGTGAGCTCAGAAATGTTTCCAAAAGCCATGACTGTTTATGATACGACTATTCTTCATACACGCAGTATGTTGTTACTTGATGTGTATTATCATAACATAAGCCCCAATAATGTCATAGAAGTATGTACACCTTCATGGATTCGTAACTGGGATCTCTCGTTGTCTGGGGATTATGATTATGAAACCGAGTGGCATTCGGCCTTCTTCAGAGAGCAGGAAATGTCAATGTGTTTCTGGTTCCGAAATAAATTCCCCAAGATAGCTCTATTTTATTTTACAGAACCTGGCAAGTACGAAGACAATATGGTATTGGATTTCAAGTTCAGTGTAGCCATTAATGGCACTAAGCAATTCAGTTCTTCATGTAACTACATATTTTCCACACGGGGAATTACGCAAATTGATCTTGGCTGTGATCTACAATGCAAAGTGGAGAGGGTATTTTCAGAGCACGAATGGAATAAAGTAGAGATTTTTTGGGAGTTAGAATACCTCTTGCCATGTGATTCTGAAGGGAACACAAGATTGAGAATTGTAAATATACTCTACATTCATGTCTACGAAGAAAACAACGTGGAGGATATCAAAAGAGAAAAACCATCTGATCTCCCTCCGTCTCCCTTCCAGGAATTTCAAGAGATTTTGAGAATAAAGGAAACGAGTTAG 3048 0.3927 MTQETLPHPSSFTYEWTYDVFLIFRGVDTRHNFTGNLYNSLHERGIHTFIDDEGLNKGDEITPSLLQAIQDSRIFIAVFSKNYASSTFCLEELVMILECSKAQGRLFWPVFYDVDPSQVRHQSGTYAEALAKLEERFKDDKDKDKVKKWRDALHEAANMSGSHFQFQHGSQYEYQFIRNIVEEVSKKINRSPLYVADKPVALDSRVQEVKSLLGLGSDEGVNMIGIHGTGGIGKSTLARAVYNLIADQFEGFCFLADIRERAINNHGLVQLQETLLSELLGEKDIKVGDVNRGIPIIKRRLQRKKILLILDDVDKLKQLQVIAGGQDWFGSGSRIIIITRDKHLLVTHGIVKSYEVNELSDDNALELFSWHAFKNNKIDPIYKDISKRAVSYAHGLPLALEVIGSHLFGKSLEVWKSALDKYERTPHKEIHETLKVSYDDLEEDEKGIFLDIACFFNSYEIRYVKQILYLHGFHEENGIQVLTDKSLVKIDRNGFVRMHDLIQDMGREIVKRESTLEAGRRSRLWLNEDIVHVLEDDTGTDTIEAIIMNLCKNKEVQWSGKAFEKMKNLRILIIRDVRFSRGPQNLPNILRVLDWSGYPSLSLPSDFNPKNLVILSLPESCLRSFKPLKVFESLNFMDFEGCKFLTELPSLSGVPNLGALCLDNCTNLLKIHGSVGFLDRLVLLSAQGCTQLEILVPSIHLTSLETLDLRGCSSLESFPDVLGMMENIRDVYLDQTAIDELPFSIGNLVGLQRLYLRECKKLIQLPNSIHILPQLETIMTYGRRGFRLFEDTEKVSSEMFPKAMTVYDTTILHTRSMLLLDVYYHNISPNNVIEVCTPSWIRNWDLSLSGDYDYETEWHSAFFREQEMSMCFWFRNKFPKIALFYFTEPGKYEDNMVLDFKFSVAINGTKQFSSSCNYIFSTRGITQIDLGCDLQCKVERVFSEHEWNKVEIFWELEYLLPCDSEGNTRLRIVNILYIHVYEENNVEDIKREKPSDLPPSPFQEFQEILRIKETS 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3081g00003 1015 Gene3D Ribonuclease Inhibitor 699 790 IPR032675 -
Gabi3081g00003 1015 Gene3D - 187 351 IPR027417 -
Gabi3081g00003 1015 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Gabi3081g00003 1015 Pfam TIR domain 18 192 IPR000157 GO:0007165
Gabi3081g00003 1015 Pfam NB-ARC domain 205 440 IPR002182 GO:0043531
Gabi3081g00003 1015 SUPERFAMILY L domain-like 547 784 - -
Gabi3081g00003 1015 Gene3D - 358 442 IPR042197 -
Gabi3081g00003 1015 Gene3D Ribonuclease Inhibitor 535 698 IPR032675 -
Gabi3081g00003 1015 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 190 - -
Gabi3081g00003 1015 SMART AAA_5 220 351 IPR003593 GO:0016887
Gabi3081g00003 1015 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 790 IPR044974 GO:0006952
Gabi3081g00003 1015 SUPERFAMILY "Winged helix" DNA-binding domain 429 535 IPR036390 -
Gabi3081g00003 1015 Gene3D - 17 186 IPR035897 -
Gabi3081g00003 1015 SMART till_3 17 159 IPR000157 GO:0007165
Gabi3081g00003 1015 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Gabi3081g00003 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 452 IPR027417 -
Gabi3081g00003 1015 PRINTS Disease resistance protein signature 393 407 - -
Gabi3081g00003 1015 PRINTS Disease resistance protein signature 699 715 - -
Gabi3081g00003 1015 PRINTS Disease resistance protein signature 223 238 - -
Gabi3081g00003 1015 PRINTS Disease resistance protein signature 300 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3081g00003 Gabi-Chr3081 19597 23364 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3081g00003 7 794 WRKY Transcription Factor Family AT4G12020 34.155 2.86e-102 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3081g00003 - - mtr:11441658 1288.09