Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3078g00003 ATGGCCAAAAAATGTGATGGAACTTCTATAGGAATTGACCTTGGCACGACCTACTCATGTGTTGCAGTATGGCAAGCGCAAAACAATCGAGCTGAGATAATCCATAATGAACAAGGCAATAGAGTCACGCCTTCTTACGTTGCTTTCACTAACCACCAAAGGTTGATTGGCGATGCCGCAAGAAACCAGGCTGCTTCTAATCCATCCAACACTGTCTTTGACGCAAAGAGGTTGATTGGAAGGAAATATAGTGATTCTATTGTACAAGATGATATAAAGCTGTGGCCATTTAAGGTCATTGCTGGATCGGATGACAGACCCATGATTGTGGTTATGTACAAGGGTGAGGAAAAACATTTTGCTGCTGAGGAAATTTCATCTATGATCCTTACAAAGATGCGGGAGATTGCAGAGTCATTCTTGGCATCACCGGTAAAGAATGCAGTTATTACTGTGCCTGCTTATTTCAATGACTCTCAACGTCAAGCTACGAAAGATGCTGGTGTCATTGCTGGCCTCAACTTTGTGCGGATAATCAATGAACCCACTGCTGCAGCTGTTGCTTATGGTCTTCAAAATAGAGCTAATTTTGTTGGAAAGAGGAATGTTTTTATCTTTGATCTCGGTGGTGGCACTTTTGATGTATCTCTTCTCACAATTAAGGGTGATAACTTTGAAGTTAAGGCTACTGCTGGAGACACTCACCTCGGGGGAGAGGACTTCGATAGCAGAATGTTGAACCACTTCGTACAGGAGTTTAGGAAGAAGAAAAGAGTGGACATTAGTGGGAACCCAAGAGCACTGAGGAGGTTGAGAAGTGCGTGTGAGAGGGCAAAAAGGATACTTTCATTCGAAATAGAGACCACAATTGAGGTGGATGCAATATGTCAGGGTATTGACTTCTGTTATTCAGTCACTCGTGCCCAGTTTGAGCTACTCAACATTGACCTCTTTAGAAAGTGCATGGATACTGTTGAAAGGTGTCTGACTGATGCTAGTACGGACAAGAGTGATGTACATGATGTTGTACTTGTTGGTGGCTCTTCTAGGATTCCCAAAGTGAAGGAGCTATTGCAGGACTTCTTCAAGGGGAAGGATCTCTGCAAGACTATCAACCCTGATGAGGCTGTTGCTTATGGAGCAGCTGTTCAGGCTGCTTTGTTGAGTCAAGGCAATAGGTTTGCTCCAAACTTAGTGCTGTCGGATGTTACACCACTGTCACTTGGTATATCCACAAAAGGAGATCTCATCAGTGTAGTGATTCCTAAGAACACTACTATTCCTGTCAAGAAGGAAAGTCCATATAGTTCACCTGAAGATTACTTATCATTGGTCTCAATTAAGGTCTATGAGGGTGAGAGAACAAGAGCTAGTGATAACAACTTGTTGGGCTCATTCAATCTTTCAGTTCCCTCTGCACCCCGAGGCCTTCCTATCAATGTATGCTTTGATATAGATGCTGATGGTATACTAAATGTATCTGCTAAGGAAGAAACTGGTGGCAACAAGAAGGACGTTACTATAGCCAATGAAATTGGAAAACTGTCAGCGGTAGAAATTGAGAGAATGTTGCTGGAAGCTGAGATTTACAAGGCTGAAGATATGAACCACAAAAAGAAGGTTGAAGCAATGAATGCTTTGGATCGATATGCGTACATGATGGAGAATGAATTGAAGGATACAATTATTAGTGCTAAGATTTTACCTCAAGTCGAGCAGGAAGTTAAGGCTGCAATTAGAGTAGCCAGAAATTTGCTTGACGATAAACAGCAAGAAGAAACAAATGTGTTTGAGAACTGTCTGAACATGCTTAAGAGCATTTTCAAAACAGTTACAGCCGAGCTGAACTCTGATAAGGAAAATGTCGAGGATGATTATTAA 1881 0.4195 MAKKCDGTSIGIDLGTTYSCVAVWQAQNNRAEIIHNEQGNRVTPSYVAFTNHQRLIGDAARNQAASNPSNTVFDAKRLIGRKYSDSIVQDDIKLWPFKVIAGSDDRPMIVVMYKGEEKHFAAEEISSMILTKMREIAESFLASPVKNAVITVPAYFNDSQRQATKDAGVIAGLNFVRIINEPTAAAVAYGLQNRANFVGKRNVFIFDLGGGTFDVSLLTIKGDNFEVKATAGDTHLGGEDFDSRMLNHFVQEFRKKKRVDISGNPRALRRLRSACERAKRILSFEIETTIEVDAICQGIDFCYSVTRAQFELLNIDLFRKCMDTVERCLTDASTDKSDVHDVVLVGGSSRIPKVKELLQDFFKGKDLCKTINPDEAVAYGAAVQAALLSQGNRFAPNLVLSDVTPLSLGISTKGDLISVVIPKNTTIPVKKESPYSSPEDYLSLVSIKVYEGERTRASDNNLLGSFNLSVPSAPRGLPINVCFDIDADGILNVSAKEETGGNKKDVTIANEIGKLSAVEIERMLLEAEIYKAEDMNHKKKVEAMNALDRYAYMMENELKDTIISAKILPQVEQEVKAAIRVARNLLDDKQQEETNVFENCLNMLKSIFKTVTAELNSDKENVEDDY 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3078g00003 626 Gene3D - 10 384 - -
Gabi3078g00003 626 Gene3D - 73 128 - -
Gabi3078g00003 626 SUPERFAMILY Actin-like ATPase domain 8 192 IPR043129 -
Gabi3078g00003 626 Coils Coil 572 592 - -
Gabi3078g00003 626 Pfam Hsp70 protein 10 613 IPR013126 GO:0005524|GO:0140662
Gabi3078g00003 626 FunFam Heat shock 70 kDa protein 73 128 - -
Gabi3078g00003 626 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Gabi3078g00003 626 Gene3D Actin; Chain A, domain 4 237 320 - -
Gabi3078g00003 626 PANTHER HEAT SHOCK PROTEIN 70KDA 10 577 IPR013126 GO:0005524|GO:0140662
Gabi3078g00003 626 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Gabi3078g00003 626 SUPERFAMILY Actin-like ATPase domain 200 388 IPR043129 -
Gabi3078g00003 626 FunFam Heat shock 70 kDa 237 320 - -
Gabi3078g00003 626 Gene3D - 515 617 IPR029048 -
Gabi3078g00003 626 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Gabi3078g00003 626 Gene3D - 194 368 - -
Gabi3078g00003 626 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 397 548 IPR029047 -
Gabi3078g00003 626 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 513 IPR029047 -
Gabi3078g00003 626 PRINTS 70kDa heat shock protein signature 38 50 - -
Gabi3078g00003 626 PRINTS 70kDa heat shock protein signature 211 221 - -
Gabi3078g00003 626 PRINTS 70kDa heat shock protein signature 60 68 - -
Gabi3078g00003 626 PRINTS 70kDa heat shock protein signature 339 355 - -
Gabi3078g00003 626 PRINTS 70kDa heat shock protein signature 371 391 - -
Gabi3078g00003 626 PRINTS 70kDa heat shock protein signature 397 416 - -
Gabi3078g00003 626 PRINTS 70kDa heat shock protein signature 148 168 - -
Gabi3078g00003 626 PRINTS 70kDa heat shock protein signature 476 492 - -
Gabi3078g00003 626 PRINTS 70kDa heat shock protein signature 8 21 - -
Gabi3078g00003 626 FunFam Heat shock protein 70 10 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3078g00003 Gabi-Chr3078 25709 27913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3078g00003 1 615 Calmodulin-binding Proteins AT3G12580 65.858 0.0 828