Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3078g00001 ATGAGACGTTCAAGGAAAAACAGTAAACACATTCCAAATGATAGACCTTGTAAAGTATCTTTCATGGAGAGAAGGAAGAGATTAATGAGATTAAAGAAGGAAGTATCTGATTTTTCCACCAAAAATGGAGTAGAGGCTATCTTAATTGCATATGATGGCAATGTGGATGCTCCACCAGTGACTTGGCCCCAAAATCCCTCAAAGATACACTCCATGATTGAAAAGTACGAGCGTCAAAGGAATGAGAAATCTGTTGTGACCTTTGATCTCGAAGACTATTACAAGAATAAGTTGAACAAGCTTGAAGCTGAGATTTCAAGAGTGCAGAAAGAGAATATCAGGATGAAGTATCCAACTTGGGATCCAAGTTTCGACAACCTAGGAGAGGAGGAGCTGAGCGAGCTCATTGCTAAGTTGGATGCTAAGCTTGCAGCTTGTGATCAGAGAATTGACACCTTGAAAAAGGAGCATATGAAGAGAGGTCATTAG 489 0.4008 MRRSRKNSKHIPNDRPCKVSFMERRKRLMRLKKEVSDFSTKNGVEAILIAYDGNVDAPPVTWPQNPSKIHSMIEKYERQRNEKSVVTFDLEDYYKNKLNKLEAEISRVQKENIRMKYPTWDPSFDNLGEEELSELIAKLDAKLAACDQRIDTLKKEHMKRGH 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3078g00001 162 Coils Coil 91 111 - -
Gabi3078g00001 162 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Gabi3078g00001 162 Coils Coil 136 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3078g00001 Gabi-Chr3078 5364 5852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3078g00001 25 153 Type I MADS-box Gene Family AT5G55690 26.866 2.98e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3078g00001 - - aprc:113852359 149.828