Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3077g00046 ATGGATCGTGCTGTGTTTCTCCTCATTCTTTTCACACAAAGCTTTCTTCTATGTTCAATTGCCACGGCACAGCAGAATTACTCAGCAAATTCAATACTAAGTTGCAAGAACAATGACACAACGGGGCCTTCTCCAGCTTTCCTTTACACCTGCAATGGCCTCCACAAATCCTGCCAGGCCTTCCTCATCTTCAAATCCCAACCTCCTTACAACTCCACGACCACAATTTCCAACCTCACATCATCAAACCCAGAAGAGCTTGCCAGAATCAATAACGTCACTCTGCACACGGTGTTCCAAACTGGCAAAGAGGTAATTATCCCTGTCAACTGTTCCTGTCTAACGAGGGACTACTACCAAGCTGAAAGCGAATATGTATTGCCTCCGAATCCAACATATTTTTTAGTAGCAAATGATACGTATCAGGGGTTGTCCACTTGTGATTCTCTCATGCGTGCCAATCCATATGGGGTGCTTGATTTGCTTCCTGGCATGGAATTGCACGTGCCACTCAGATGTGCTTGTCCAACGGCGCAGCAATCAACGAACGGCACCAAGTATTTAATGACTTACTCAGTGAACTGGGGTGATAATATTTCTAATGTTGCCAAAAGATTCAATGTTACTGCAGGTAGTGTAGTTGATGCCAACAGTTTTTCCTCTGAAAATCAAGCTCTCTTTCCGTTCACAACTGTTCTGATTCCGTTTCCAAGTGAACCCAGGAGTTCATTGACCATAGTTGATAATCGTCAACCAACCACTTTACCTCCTCTTGTTTCCATTGCTGAAAAGGATAAGAGTAAGACCAAGAGAAAATTCATCGTTGCGGGAGCCACGACAGGGGGCTTCATGCTTGTTCTCTGTGTCATTTTATCTGCGGTGTTTTTGCTCAGAAATAGATCAGCGGGGTTCTTTAAGCGAGGTACAAAAGGTAAAACATTGACCCCTTCAGAAGGTATCCGTGGGGAGATAGCAAGCATTGAGCTTCTCTCCAAAGTGTACAGGTTTGAGGAAATAAAGGAAGCAACTGAGAATTTTAGTCCAAGGAATAGAATAAAGGGATCTGTGTATCGCGGGGTATTTGGTTATGGCAGGAACATCTTGGCTATCAAAAAAATAAATGCAGATGCGTCCAAGGAAGTGAATTTGCTGGGAAAGATCAATCATTTCAACCTGATAAAGCTGCAAGGTTACTGTAAAAATGATGGCTTCTTCTGTCTTGTTTTTGAATATATGGAAAATGGCTCCTTAAGGGAATGGCTTGGAAAAAGCAGGTCCACAGAGCACCAGTGCTGGGCAAAGAGGATCCAAATTGCTCTAGATATTGCCAATGGACTACAGTATCTTCACAACTTCACCGAGCCCTGCTATGTGCACAAGGACATTAGCACTGACAACATTCTACTAAACGGAGATCTAAGGGCCAAGATAGCGAAATTTACTCTTGCTGAAGAATCAAAGAGGGAAGTAACCTGCGGTTCTTCCACATTACATGTTGTGGGAACTAGGGGATATATGGCCCCAGAGTATCTGGAGGCAGGGATAGTCACTTCCAAAATGGATATCTATGCCTTTGGAGTGGTGCTCTTGGAATTGATCACAGGCAAAGACTCTATTATAGTGCAAGATGGAAGAGAAGTAATGCTTTCAGCAGTCATTACAAATCTCATTGATGAAGATGATGCAGAAGCGAAACTCAGTTTGTTCATTGATCCACGCCTCACTGGAAACAGCGGGAATGTATTTGCTCTTCAGCTAGTTAGGCTAAGTCTAGCATGCCTGATAGAAGAACCTGCAAGGAGACCAAACATGGCTGAGGTAGTCTCTAGCTTATTGAAAATACATACAGAGATGGACAGAAGAATATCATCTGGCACCAATAGCAGTATACGCCCGGAGAGGTGA 1905 0.4352 MDRAVFLLILFTQSFLLCSIATAQQNYSANSILSCKNNDTTGPSPAFLYTCNGLHKSCQAFLIFKSQPPYNSTTTISNLTSSNPEELARINNVTLHTVFQTGKEVIIPVNCSCLTRDYYQAESEYVLPPNPTYFLVANDTYQGLSTCDSLMRANPYGVLDLLPGMELHVPLRCACPTAQQSTNGTKYLMTYSVNWGDNISNVAKRFNVTAGSVVDANSFSSENQALFPFTTVLIPFPSEPRSSLTIVDNRQPTTLPPLVSIAEKDKSKTKRKFIVAGATTGGFMLVLCVILSAVFLLRNRSAGFFKRGTKGKTLTPSEGIRGEIASIELLSKVYRFEEIKEATENFSPRNRIKGSVYRGVFGYGRNILAIKKINADASKEVNLLGKINHFNLIKLQGYCKNDGFFCLVFEYMENGSLREWLGKSRSTEHQCWAKRIQIALDIANGLQYLHNFTEPCYVHKDISTDNILLNGDLRAKIAKFTLAEESKREVTCGSSTLHVVGTRGYMAPEYLEAGIVTSKMDIYAFGVVLLELITGKDSIIVQDGREVMLSAVITNLIDEDDAEAKLSLFIDPRLTGNSGNVFALQLVRLSLACLIEEPARRPNMAEVVSSLLKIHTEMDRRISSGTNSSIRPER 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3077g00046 634 Gene3D LysM domain 188 235 IPR036779 -
Gabi3077g00046 634 ProSitePatterns Tyrosine protein kinases specific active-site signature. 457 469 IPR008266 GO:0004672|GO:0006468
Gabi3077g00046 634 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 8 619 - -
Gabi3077g00046 634 Gene3D Transferase(Phosphotransferase) domain 1 412 630 - -
Gabi3077g00046 634 Gene3D Phosphorylase Kinase; domain 1 323 411 - -
Gabi3077g00046 634 ProSiteProfiles LysM domain profile. 189 234 IPR018392 -
Gabi3077g00046 634 Pfam Protein tyrosine and serine/threonine kinase 375 610 IPR001245 GO:0004672|GO:0006468
Gabi3077g00046 634 Pfam LysM domain 191 235 IPR018392 -
Gabi3077g00046 634 FunFam PTI1-like tyrosine-protein kinase 3 412 624 - -
Gabi3077g00046 634 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Gabi3077g00046 634 SUPERFAMILY Protein kinase-like (PK-like) 329 611 IPR011009 -
Gabi3077g00046 634 ProSiteProfiles Protein kinase domain profile. 294 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3077g00046 Gabi-Chr3077 329037 331953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3077g00046 17 614 Receptor kinase-like Gene Family AT2G23770 39.123 5.06e-134 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi3077g00046 PK_Tyr_Ser-Thr 8.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3077g00046 - - gmx:100806221 823.928