Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3077g00041 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGACACCCCCAAGCCCTTTCTGCTCCAACAACAACAATAATAACAACGATGCTGGCAACTTTGAATGTAACATTTGCTTTGAATTAGCACAAGACCCAATAATTACTTTGTGTGGTCATCTTTTCTGTTGGCCTTGTCTTTACAAATGGCTTCACTTCCACTCACACTCGCAAGAATGCCCTGTGTGCAAGGCCCTCGTTGAGGAAGAGAAGCTGGTTCCCTTATATGGGAGAGGAAAGACATCAACTGACCCAAGATCAAAATCTATTCCAGGTCTTAATATCCCACATCGTCCCTCTGGTCAGAGACCTGAAACTGCTCCACCACCTGAATCAAATCATTTTCATCAACATGGGTTTGGATTTATGGGTGGGTTGGGTGGGTTGAGAGGGTTTCCGCCGCCGCCAATGACAACCGCAAGATTTGGGAATTTCACATTGTCTGCTGCATTTGGTGGTTTTATACGGCGGCCATCCTTATTTAACTTTCAGTTCCATGGGTTTCATAATGGGACCATGTATGGTGGAGCAGCTGGTTTTCCTTATGGATTTTCTAATTCATTTCATGGCTTCCATGCTCATAGTTATCCTCTGCACGCACGTCAAGGGCAACAAGATTATTTTCTCAAGCTACTGCTTCTCTTTGTTGTTTTCTGTCTCGTTCTTGCTTTTATTTCGCAACAGATAGTATAG 723 0.4412 MASGFGESTSRTPPSPFCSNNNNNNNDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSHSQECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGLNIPHRPSGQRPETAPPPESNHFHQHGFGFMGGLGGLRGFPPPPMTTARFGNFTLSAAFGGFIRRPSLFNFQFHGFHNGTMYGGAAGFPYGFSNSFHGFHAHSYPLHARQGQQDYFLKLLLLFVVFCLVLAFISQQIV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3077g00041 240 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Gabi3077g00041 240 SMART ring_2 33 73 IPR001841 -
Gabi3077g00041 240 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Gabi3077g00041 240 MobiDBLite consensus disorder prediction 87 123 - -
Gabi3077g00041 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 87 IPR013083 -
Gabi3077g00041 240 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 87 - -
Gabi3077g00041 240 Pfam Zinc finger, C3HC4 type (RING finger) 33 73 IPR018957 GO:0046872
Gabi3077g00041 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 15 232 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gabi3077g00041 240 SUPERFAMILY RING/U-box 30 86 - -
Gabi3077g00041 240 CDD RING-HC_AtRMA-like 31 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3077g00041 Gabi-Chr3077 275448 277991 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3077g00041 31 220 C3H Transcription Factor Family AT1G19310 68.205 1.56e-86 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3077g00041 K10666 - gmx:100527488 375.941