Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3077g00020 ATGACGGAACCTCATAATAATCCTTCACCACCGCTACTTTCTACAGCTACCGGAGAAGCTACCGTCGCAATCCCACCGCCACCGCCCAAAAAGAAGCGAAGCCTACCTGGAATGCCAGATCCGGATGCTGAGGTGATTTCTTTGTCGCCGAAGACTCTGTTGACGACGAACCGTTTCGTGTGCGAGATCTGCAACAAGGGATTCCAACGCGACCAGAACTTGCAGCTTCACCGGCGAGGCCATAACCTGCCGTGGAAGCTCCGGCAGCGAGAGAGCAAAGAAATCCGAAAGAAAGTGTACGTGTGCCCCGAGGCTTCCTGCGTCCACCACAACCCGTCGAGGGCGCTGGGTGACCTCACCGGCATAAAGAAGCACTTTTGTAGAAAACACGGCGAGAAGAAGTGGAAATGCGAACGTTGCTCCAAGAAATACGCCGTACAGTCCGATTGGAAAGCCCATATGAAAACTTGCGGAACCAGAGAGTACAGATGTCACTGCGGCACCTTGTTCTCAAGGAGGGATAGCTTCATGACGCACAGAGCTTCTTGCAATGTCTTAGCGGAAGAGAGTGGCGGGCCCAAAACACTAGCTGCTTCCCCCCCTACGCCTCCACTTACTCCCTCTTCACATGTGGTGTCTCCATCTTTGTCCATTCACAGCTCAGACATTCCGGAAAATCCAACGAGGCTGTCGCCGACGTCAACGAGTTTGGTTAACCCTGTCCCAACCGGAACCCCTACAAGTTCTACTACTTGTAGCACTGTTTTTGCAAGTGTGTTGACATCCTCAACAGCACCATCAACTTCCTCATTCTCAAATCTCATGTCAAGCTTGGCTTGCTCAGATTGTCCCACTTCCATTTCTACCATAGAACCCACATCCCTCTCTCTCTCCACATCACTCTATCTCTCCAACAATGAACAATCCCTATTCCCGGATCAACATGATCTTCGCCACTACACTGCACCACAACCTGCGTTATCTGCTACAGCATTACTCCAAAAGGCAGCTCAAATGGGTGCATCCAATGCATCCTTGCTTCGGGGTTTAGGCTTAACAACAACATCTTTCTTCGGGAAAGATGACACCACAACAACACAATGGAATGGTTATGTTAAGCAAGAGGCAGATGATAACCTCGGGCTTGGACTTCCATGTGGAAATGAGGGTGTGATGATGGGCTCGTCTCCTCCATTTGTTGGCCAGCCCATGACTCGTGATCTTCTTGGTCTAAGCATCGGTGTGGGGGCAAGCAGGGGTGGTCTTTCTGCTTTACTTACCCCTTTTGAAGGGAACTTGGATTCATCTGGGGATAGAGGAGTTCAACCGTAG 1332 0.5075 MTEPHNNPSPPLLSTATGEATVAIPPPPPKKKRSLPGMPDPDAEVISLSPKTLLTTNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRESKEIRKKVYVCPEASCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYRCHCGTLFSRRDSFMTHRASCNVLAEESGGPKTLAASPPTPPLTPSSHVVSPSLSIHSSDIPENPTRLSPTSTSLVNPVPTGTPTSSTTCSTVFASVLTSSTAPSTSSFSNLMSSLACSDCPTSISTIEPTSLSLSTSLYLSNNEQSLFPDQHDLRHYTAPQPALSATALLQKAAQMGASNASLLRGLGLTTTSFFGKDDTTTTQWNGYVKQEADDNLGLGLPCGNEGVMMGSSPPFVGQPMTRDLLGLSIGVGASRGGLSALLTPFEGNLDSSGDRGVQP 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3077g00020 443 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 411 IPR031140 -
Gabi3077g00020 443 FunFam protein indeterminate-domain 12-like 38 106 - -
Gabi3077g00020 443 SUPERFAMILY beta-beta-alpha zinc fingers 58 156 IPR036236 -
Gabi3077g00020 443 Gene3D Classic Zinc Finger 113 190 - -
Gabi3077g00020 443 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Gabi3077g00020 443 MobiDBLite consensus disorder prediction 190 246 - -
Gabi3077g00020 443 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Gabi3077g00020 443 Gene3D Classic Zinc Finger 39 109 - -
Gabi3077g00020 443 SMART c2h2final6 59 81 IPR013087 -
Gabi3077g00020 443 SMART c2h2final6 135 155 IPR013087 -
Gabi3077g00020 443 SMART c2h2final6 100 130 IPR013087 -
Gabi3077g00020 443 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
Gabi3077g00020 443 MobiDBLite consensus disorder prediction 1 43 - -
Gabi3077g00020 443 MobiDBLite consensus disorder prediction 1 16 - -
Gabi3077g00020 443 Pfam Zinc-finger of C2H2 type 59 81 - -
Gabi3077g00020 443 MobiDBLite consensus disorder prediction 209 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3077g00020 Gabi-Chr3077 138313 141168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3077g00020 14 426 IDZ Gene Family AT3G50700 50.559 2.34e-129 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3077g00020 zf-met 0.0031 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3077g00020 K25869 - gmx:100800089 528.48