Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3077g00001 ATGGAACTGAATCGTGGACTGCTCAAGGCCGTTATAATCTTGTTGTTTGTTCAGTTTGGTTTAGGCAGAAGAATGGGTTTGGGTTTGAGCTCAAGAACCGAATGGCGGACTTTGCTGGAACTACGTTCATCGTTGGGGATTAGTGGGAAGGATTGGGTCAAAAAAGCCGAACCGTGCTTTCACTGGACCGGAGTTCAGTGCGAGAACGGTCGAGTTGTGGGCATCAATTTGACCGGTTTAAGCCGAACCCGAGCCGGTCGTCTCCAAACACGGTTTGCAGTGGATTCTCTTGCGAATCTGACCCTATTGGGTTCGTTCTGCGCTTCCGGTTTTTCTCTGAATGGGTCTATTCACGAGTGGTTGGGACAGAGCCTTAGGAAACTCGAAAAGCTTGATCTCCGGTCTTGCTGGCTCACCGGTCCGATTCCTGGGTCGCTTGGGGGTTTGAATGGGTTGAAAACTCTGATTCTCTCAGACAATAGTCTCACTGGTAGAATGCCTTCGGAACTTGGAAGGTTGTCTGGGCTATCGGTTCTTGATCTCTCTAACAATTCGTTGACAGGACCAGTGCCTAACTCTTTCTCTTTTCTTGTTAATCTCACAAGGCTTGATCTTTCTTCCAATTTTTTATCTGGGTCCATTCCACCTCATCTGGGTGCCCTTTCTAATCTCCAAATTTTGAATCTTTCAGATAATGGCCTCACTGCTTCGGTTCCTCCTCAACTGGGTAACCTTTACAACTTGGTTAAACTTGATCTTAGCAAGAATTCTCTATCTGGGTCATTGCCAGATCTTTTGTTTTCCAAGATTCAAATGCTCATTCTCAGTGAGAATGCCTTTGATGGTGCTCTTCCTGCTACGTTGTTTTCCGGGCCCAACTTGCACTTTCTCGATGTATCCAACAACACCCTCACTGGACCCTTGCCTAAACTCACTAGTTCAAGCAATGTTAATTATGCTGGTGCCACATTCAATCTCTCAAACAATTTGTTCTATGGACCTCTGATTACAATGCCTAGCAAATTTAAAACAATTGATTTGTCCGGTAATTATTTCCAAGGCGAGGTGCATGTTGGTCGTTTTAAATTTAGTACTAGTTTTACTCTTGATAGAAATTGCCTACGGATGATTCCAAACCAGAGGGATTTAGAGGATTGTAGAGTGTTTTATGTTGAGAGAGCATTACCCTTTAGTCCCGGTGTCAAAGAACCAACGCAATCGCCCTTGCTAGATTCTGAGTCCGGGAACAACAAACGAGAGATATTCATACTGGCAGGTATATTTGGTGGGCTTGGCTTTATTGTGCTTCTGGTATTGGTCCTCATGCTCATGCTGCTTCTAAAACAATGTAGTGGTCATAATAGCATCGGAATTCAAAGGGGGACAGCAAATGTGGGACCTGTTCCAGAAGTGGAAAATCCTACACCTCCAAAGGACCCTGTGTTTGTAGCTGGCACGGGAGAATCATTTTCATATGAGCAAATGCTTCATTTGACTGCTAACTTTGCTGAAGAAAATTTAATCAAACACGGTCATTCTGGAGACCTCTTCTGGGGAACCTTGGAAGGTGGTGTAACAGCGGTTGTAAAAAAGGTAGATTTAAATTTATTTAAGAAAGAATCATACATGGTGGAATTAGGACTACTATTAAGCAAGGTTTCACATGCAAGATTGGTCCCCCTCTTGGGGCACTGCTTGGAGAATGAGCATGAGAAATTTTTAATTTATAAGTATATGCCAAATGGAGATTTTGCTACTTCCTTGCACAGAGTCACCTGTTCCGATGATAAATTTAAGTCTATGGATTGGATCACGAGATTGAAAATTGCAATAGGAGCTGCTGAAGGCCTATCTTACCTACATGAGTGCAGCCCTCCCCTAGTTCACAGAGATGTCCAAGCAAGCAGCATACTTCTTGATGATAAATTTGAAGTGCGACTTGGAAGTTTGAGCGAGGTTACTGCCCAAGGAGATCTTCATCAGAGTGTCATCACAAGGATTTTCCGCAAATCATCATCTTTGGATCAAGGCAATTCTGGTTCATCACTTGATTCATGTCCCTATGATGTCTACTGTTTCGGGAAGGTTTTACTCGAGCTCATTACAGGAAATCTTGGTGTCAGCAAATCAGATGATGCGGCCACTAAAGAGTGGTTAGAACAAACCCTGTCTTACATCAGTATATATGACAAAGAACAGGTGACTAGGATTGTTGACCCATCTTTGATAGTAGATGATGACTTATTGGAAGAGGTATGGGCAATGGCAATTGTAGCCAGGTCATGCTTGAATCCCAAGCCTTCTAAACGCCCTCCTATGAGGTATGTTCTCAAAGCATTGGAAAATCCAGTGAAGCTTGTCAGAGAAGAAAATTATAGCTCAGCCAGGTTGAGAACAACTTCATCTAGGAGATCTTGGAGCTTTGCATTCTTGGGTAGCTGGAGACAGAGCTCATCAGAGAGTGCTACTGCCACAGTACATACAAACACAGAGGGTGCGAGTGGCTTTAGACAATCAGGAAGAGTAAGTTCACAAGGTAGTGGTGGAAATGATCACTCATTTTCTCAAAAAATATCATCCAATGAAATTTTCCCTGAACCATTGGAAATGCAAGAGATGGAGAGGCAAGATGAGCACTAA 2640 0.4333 MELNRGLLKAVIILLFVQFGLGRRMGLGLSSRTEWRTLLELRSSLGISGKDWVKKAEPCFHWTGVQCENGRVVGINLTGLSRTRAGRLQTRFAVDSLANLTLLGSFCASGFSLNGSIHEWLGQSLRKLEKLDLRSCWLTGPIPGSLGGLNGLKTLILSDNSLTGRMPSELGRLSGLSVLDLSNNSLTGPVPNSFSFLVNLTRLDLSSNFLSGSIPPHLGALSNLQILNLSDNGLTASVPPQLGNLYNLVKLDLSKNSLSGSLPDLLFSKIQMLILSENAFDGALPATLFSGPNLHFLDVSNNTLTGPLPKLTSSSNVNYAGATFNLSNNLFYGPLITMPSKFKTIDLSGNYFQGEVHVGRFKFSTSFTLDRNCLRMIPNQRDLEDCRVFYVERALPFSPGVKEPTQSPLLDSESGNNKREIFILAGIFGGLGFIVLLVLVLMLMLLLKQCSGHNSIGIQRGTANVGPVPEVENPTPPKDPVFVAGTGESFSYEQMLHLTANFAEENLIKHGHSGDLFWGTLEGGVTAVVKKVDLNLFKKESYMVELGLLLSKVSHARLVPLLGHCLENEHEKFLIYKYMPNGDFATSLHRVTCSDDKFKSMDWITRLKIAIGAAEGLSYLHECSPPLVHRDVQASSILLDDKFEVRLGSLSEVTAQGDLHQSVITRIFRKSSSLDQGNSGSSLDSCPYDVYCFGKVLLELITGNLGVSKSDDAATKEWLEQTLSYISIYDKEQVTRIVDPSLIVDDDLLEEVWAMAIVARSCLNPKPSKRPPMRYVLKALENPVKLVREENYSSARLRTTSSRRSWSFAFLGSWRQSSSESATATVHTNTEGASGFRQSGRVSSQGSGGNDHSFSQKISSNEIFPEPLEMQEMERQDEH 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3077g00001 879 FunFam Leucine-rich repeat receptor protein kinase EMS1 190 287 - -
Gabi3077g00001 879 FunFam Predicted protein 473 578 - -
Gabi3077g00001 879 ProSiteProfiles cAMP/cGMP binding motif profile. 505 557 IPR000595 -
Gabi3077g00001 879 Gene3D Transferase(Phosphotransferase) domain 1 579 801 - -
Gabi3077g00001 879 ProSiteProfiles Leucine-rich repeat profile. 247 269 IPR001611 GO:0005515
Gabi3077g00001 879 MobiDBLite consensus disorder prediction 820 879 - -
Gabi3077g00001 879 SMART LRR_typ_2 197 220 IPR003591 -
Gabi3077g00001 879 SMART LRR_typ_2 221 244 IPR003591 -
Gabi3077g00001 879 SMART LRR_typ_2 173 196 IPR003591 -
Gabi3077g00001 879 SMART LRR_typ_2 245 269 IPR003591 -
Gabi3077g00001 879 SUPERFAMILY Protein kinase-like (PK-like) 479 780 IPR011009 -
Gabi3077g00001 879 ProSiteProfiles Protein kinase domain profile. 502 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3077g00001 879 SUPERFAMILY L domain-like 36 384 - -
Gabi3077g00001 879 PANTHER UNNAMED PRODUCT 96 704 - -
Gabi3077g00001 879 FunFam Putative LRR receptor-like serine/threonine-protein kinase 579 800 - -
Gabi3077g00001 879 Pfam Protein tyrosine and serine/threonine kinase 507 778 IPR001245 GO:0004672|GO:0006468
Gabi3077g00001 879 MobiDBLite consensus disorder prediction 820 862 - -
Gabi3077g00001 879 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515
Gabi3077g00001 879 Gene3D Phosphorylase Kinase; domain 1 477 578 - -
Gabi3077g00001 879 Gene3D Ribonuclease Inhibitor 31 193 IPR032675 -
Gabi3077g00001 879 Pfam Leucine rich repeat 152 208 IPR001611 GO:0005515
Gabi3077g00001 879 Gene3D Ribonuclease Inhibitor 194 390 IPR032675 -
Gabi3077g00001 879 PRINTS Leucine-rich repeat signature 221 234 - -
Gabi3077g00001 879 PRINTS Leucine-rich repeat signature 176 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3077g00001 Gabi-Chr3077 9811 13611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3077g00001 33 669 Miscellaneous Gene Families AT2G16250 48.588 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Gabi3077g00001 PK_Tyr_Ser-Thr 9.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3077g00001 - - qsa:O6P43_016173 1066.6