Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3076g00020 ATGGCTGAAGAATGTGTTGGAAATACAATTGCAACCTCTTCTACCCCATTAAATTGGTGGTATCTCCAGGCAAATTCTCTTCCTTCCTGGAACGATACTAATCACGCATGGAACAACCAAACAAACCCTAATTCTTCCTCTTCTTGTGAGGAGGATATATCTGTTTCTACATCTTTCACTAATGCCTCAAGCCATTCAAGCCTCACAGTTGAGTCCTCTCGAAGACTCGTTGAGCCACATGCAACTTCCTCCAAGGTGTTGATGGGTGAACATGCTTCTGATAATCAACTTTGGAGTCATGTTCTATCAGATGTTGGATCAAATGGCGAGTTGCACAATAGCCAAGAAATTGGAGAGACCTATCTGGATGCACTGTCATCTAAAAGCTTGACAAGTGCTATGTTTGAACCAGCCTGTGACTACCTGAAGAAACTTGATACTAGCTGGGAATATAATGGTTCAACTTCATTCAATAGTTTTGAGAAGCATTTAAATGGGTTTAGTGAGGCAATGATTGAGAATAATGAAAGGTTGACTAAGTTGTCTAATCTTGTAAGCACTTGGTCTATTGCCCCACCAGACCCTGAAGTTAGTTGCCACTTTGATCCACAAACAAACAACATGTCTTTGAGTTCCTCCATGGATCATTACCCACAATCTGAGCCTTGTCATTTCAAACAACCTTTCGGAGATTCCATATCAGCCTCTGTTGGCGGAGCAAGTAGAAACTCTCCAGTTTTCACTTGCTATGATCAGGGCATGAAGGTCAAGCAAGAATATCATCATGCAAGTGAAGTGCCAGGAGCTATATTTGGAAAACCATTTAATGCAAATGGATTTAATAGCCTTTCAGTTGGAGACAGTGGTAAACTTTACCATGGGTTTCCCAATATTTCTTCATGCACAAGAAATTTCTCAGATGTTATATCGTTTAAGAGTAGGTTAGGAAGGCCAGTTATTGGAATCCATGCACAGAAGCCTAGTATGAAATACTTAAACTTATCTGAATCAAAGAAGCAGGGTCTTCAGACACCATCACCACCGATAAGAAGTAATAATAATGGAAGAGGAGAGGGGACAACACGTGAAGTAAAGAAGAAAAGATCTGAAGAATCTTCTGAAGCAAACTTGAAGAAGTCTAAGCAAGATACATCAACAGCTTCTTCTTCAAAGGTGCAGGCACCTAAAGTCAAGCTAGGGGACAAGATCACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAGACAGATACAGCATCGGTGCTGTTTGAAGCAATTGGGTACATAAAGTTTCTTCAAGAACAAGTCCAGCTACTGAGCAACCCTTACTTGAAGACCAATTTGCACAAGGATCCATGGGGAAGCTTGGATAAAAAAGATAATGAGGACGGAAAGCTAGACCTTAGGAGCAGAGGTCTTTGTTTAGTTCCCACTTCATGTACCCCTCTAGTTTACAGAGAGAACACTGGACCAGATTACTGGACACCAGCATACAGAGGATGTTTATATAGGTGA 1515 0.4112 MAEECVGNTIATSSTPLNWWYLQANSLPSWNDTNHAWNNQTNPNSSSSCEEDISVSTSFTNASSHSSLTVESSRRLVEPHATSSKVLMGEHASDNQLWSHVLSDVGSNGELHNSQEIGETYLDALSSKSLTSAMFEPACDYLKKLDTSWEYNGSTSFNSFEKHLNGFSEAMIENNERLTKLSNLVSTWSIAPPDPEVSCHFDPQTNNMSLSSSMDHYPQSEPCHFKQPFGDSISASVGGASRNSPVFTCYDQGMKVKQEYHHASEVPGAIFGKPFNANGFNSLSVGDSGKLYHGFPNISSCTRNFSDVISFKSRLGRPVIGIHAQKPSMKYLNLSESKKQGLQTPSPPIRSNNNGRGEGTTREVKKKRSEESSEANLKKSKQDTSTASSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKTNLHKDPWGSLDKKDNEDGKLDLRSRGLCLVPTSCTPLVYRENTGPDYWTPAYRGCLYR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3076g00020 504 CDD bHLH_AtbHLH_like 398 440 IPR045239 -
Gabi3076g00020 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 398 449 IPR036638 GO:0046983
Gabi3076g00020 504 MobiDBLite consensus disorder prediction 359 378 - -
Gabi3076g00020 504 MobiDBLite consensus disorder prediction 379 393 - -
Gabi3076g00020 504 MobiDBLite consensus disorder prediction 337 394 - -
Gabi3076g00020 504 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 107 482 - -
Gabi3076g00020 504 MobiDBLite consensus disorder prediction 337 358 - -
Gabi3076g00020 504 Gene3D - 396 451 IPR036638 GO:0046983
Gabi3076g00020 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 383 432 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3076g00020 Gabi-Chr3076 219710 223105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3076g00020 30 504 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 33.399 1.54e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3076g00020 - - gmx:100527800 840.491