Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3076g00019 ATGGCTGCTGCTTCCTCATCAACATCATTCTTTGGAGTCCCAGAAGAAAACCCAACTCAGATTACACATCATCAATCCTCCACAGCTGCTCCCACCACAGTGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCAATTCCAGATGCGGAGGTGATAGCACTATCTCCAAAGACCCTAATGGCAACAAACAGATTTATATGTGAGGTTTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTTCAGCTTCACAGAAGAGGACACAACCTTCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTCCATCATGATCCTTCAAGAGCTTTAGGAGACCTCACTGGGATTAAAAAGCACTACTCTCGCAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCAAAGAAGTATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACATGTGGCACAAGAGAATACAGATGCGATTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCCTTTTGTGATGCATTAGCGCAAGAGAGTGCAAGATACCCTTTAAGGACTCATTTGTTTGACACAAATCACATGAGTTTAGGCATATCCCAAGTGAGTACCCAAATTTCCCAACTGCAAAATCAGAACCAAACAGCCACTAACAGCATTATGCGCCTTGGCAATGGTGGTGCACCAAAGTTTGAGCACATAATCCCACCTTTAAACCAATCTTCATTTGGACACTCATCACAAACAATGCCTTCCTCAGCTTTCTTCATGAATGACACTAACCAAGCATTTGAAGAGCATCAATCTCAGCAAGGACAATTCTCAAACAAGCAACTACATGGTCTAATGCAACTTAATGCTGATCTTCAAGGCAACACCAATTCAGCAACAGTAGCTGCTCCTTCCAATGTTTTCAACCTCAGCTTCTTTCCAAATAACACTAGCAATGGCACCATAATCTCTGATCAATTCAACAACATAAGTGGTGTTAATCAAGGAACAACACTCTACATTAATAACAACCAAGTAAGTGATCAAGTTGGTTCGGGTTTCTCTTCACTCTTTAGCAATTCAGAGCAACATGAAAACATGTCCCCTCATATGTCCGCCACAGCATTGCTTCAAAAAGCTGCTCAAATGGGTTCAACCACAACCACCAACAACAGTTCCTCTCTACTAAGAGGAATGTGTAGTTCCTCAACCAATGATGCCAAATCTGACCATAGGGTACTTGTGCCTAATAATGTTGCCATCACTTTTGAAAGTGATCATCATAGGAGGGGAGAAGATATAATTAGATCAAGCATGGAAAATGACCAGCAAGATCTTCATGGATTCATGAACTCTATTACCAACGAGAACACTTCCATATTTGGCAATGTGCAAGGGAACCAAAACAACCTTTGTAGGTTTCACAATGTGGAGGATTCAAACAATAAGTTGCCACAAAATCTTAATATGAACTTTGGAGGGTCTGATAAGTTGACGTTAGACTTTCTTGGTGTTGGAGGAATGGTGAGAAACATGAGTGGAAGATTTTCCCAAAGAGAACAACAACAACAACAACAACGTGCCATGAGTACTATATGTTCTTTGGATCCTGACCTGAAATCAGCAGAGTCAAGCCAACATTTCGGAAACTCAACACTGTAA 1704 0.4202 MAAASSSTSFFGVPEENPTQITHHQSSTAAPTTVPQKKRRNQPGTPIPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARYPLRTHLFDTNHMSLGISQVSTQISQLQNQNQTATNSIMRLGNGGAPKFEHIIPPLNQSSFGHSSQTMPSSAFFMNDTNQAFEEHQSQQGQFSNKQLHGLMQLNADLQGNTNSATVAAPSNVFNLSFFPNNTSNGTIISDQFNNISGVNQGTTLYINNNQVSDQVGSGFSSLFSNSEQHENMSPHMSATALLQKAAQMGSTTTTNNSSSLLRGMCSSSTNDAKSDHRVLVPNNVAITFESDHHRRGEDIIRSSMENDQQDLHGFMNSITNENTSIFGNVQGNQNNLCRFHNVEDSNNKLPQNLNMNFGGSDKLTLDFLGVGGMVRNMSGRFSQREQQQQQQRAMSTICSLDPDLKSAESSQHFGNSTL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3076g00019 567 Gene3D Classic Zinc Finger 120 199 - -
Gabi3076g00019 567 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Gabi3076g00019 567 MobiDBLite consensus disorder prediction 1 49 - -
Gabi3076g00019 567 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Gabi3076g00019 567 FunFam protein indeterminate-domain 12-like 45 113 - -
Gabi3076g00019 567 Coils Coil 216 236 - -
Gabi3076g00019 567 SMART c2h2final6 107 137 IPR013087 -
Gabi3076g00019 567 SMART c2h2final6 142 162 IPR013087 -
Gabi3076g00019 567 SMART c2h2final6 66 88 IPR013087 -
Gabi3076g00019 567 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Gabi3076g00019 567 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Gabi3076g00019 567 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Gabi3076g00019 567 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 538 IPR031140 -
Gabi3076g00019 567 Gene3D Classic Zinc Finger 49 114 - -
Gabi3076g00019 567 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3076g00019 Gabi-Chr3076 195034 199103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3076g00019 36 528 IDZ Gene Family AT2G02070 48.250 5.40e-130 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3076g00019 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3076g00019 K25870 - gmx:100780268 756.518