Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3071g00005 ATGGCTCTTAGTTCGGCTCCTGCAGTGTCTATTGAACCAGTTGTTTGCCCTCAAGCAGTGATTGAGTGGTACAAATTAACAGGATCAACAGATTACAAGCGAGGTTGTAGGAAAAGAGATCTGTCCTTAAAAGCAAAGCAACATCTATGTGCTTTGGGTTGGAATTTGTGGTACATTGCTAAGCAAGGTCGATGGGAATTGCGTTATACATCACCCAATGGCAGGAACCATATTTCTCTCAGAAGTGCATGCGAAAGATGCATAGAAGAGGGAGGTTGTGGGCCTGAAAATGTTCCCTTGATTCAGAAAACAAAGGGTCTTCAAGTTAAGCGTGATCATGATCATGATCCTTCAACTACAGCCATTTCATCTTCTGCACAGCCACAAGTGCAACCAAGAAAATGCAAGAAACGAAGAGCAAGAGCGCAGTCATTTGATGATGATGAGCTTGATCAGGCCTCTTCCACTGCTGTCATTCCATCTTCTGCACAATCACATGAGGTATCAAGAAAATGCAAGAAACCGAGGGCTGAGCCAAGAAAGTGCAAGAAACCGAGGGCTGAGCCAAGAAAGTGCAAGAAAAGGCAAAGGGAGTCATTTGATGATGGTGATGATGATGAGTGGAATCCGGTGGGTCAATCTCAATCCACGAGTGAGCTTGATCAGGCCTCTTCCACTGCTGTCATTTCATCTTCTGCACAATCCCAGGAGGTACCAAGAAAATGCAAGAAACCGAGGGCTGATCCAAGAAAATGCAAGAAACTGAGGTCTGAGCCAAGAAAATGCAAGAAACTGAAGGCTGAGCCAAGAAAATGCAAGAAACCGAGGGTGAGGCATGGGGATGAGGCACAAAGTTCTTCAAATCCTGGTACAGTTAACTCTTGGTTGATAGACACCAACGTGGTACTTTCAGAATCCAAGGTTTTGGGCCCCACTAACTTTGAGGCTCATGCTGGTTGTACAAAGCAACTTCCATCAACTAGTATCTTCTTGGAAGATGGAAGGTCACTGTTGGATTGCCAAAGGGAAGCATTGAGTACTTCACAACAAAAAAATCACGATGTTGTTATGCAGAGAGACAGTGTTTATAAAGACAATAATGACAGCGTCTGTTCCATATGTCGTTATGGTGGTGAATTGATACTCTGTGATAGATGTCCATCCTCATTCCATCTCACTTGTCTTGGTCTTGAACAAGTTCCTGATGGTGATTGGTTTTGCCCACCATGTTGCTGCAAAATATGCAACCGAGCAAAATACAGAGAAGATTGTGCAGATAATGTGGATTGCAGTGTTCTCGTTTGTGATCAATGTGAGCACAAATACCACATTGGCTGCCTAAAGACTAGAGGCTTTACCAGTAACTTGGAAAACAGCCCTAATAAGAATTGGTTCTGCAATTCTGATTGTGAGAACATATTTTGCAGTCTACAGAAGCTGATAGGAAAAGCAATTCCCGTGGGGGGTGCAGATAATCTTACTTGGATGATGTTGAAGACCTTGAAAAGTGATAACCTTGGAGATCTTACTTCTGAAGACCTTGAGCGCTTGAGTCAAATTGAAAGCAAGCTAAGTGTGGCTCTTGGAGTATTCCGTGAGTGTTTTGATCCCGTTATTGATCCTCTCACTGGGAGAGATATCATATCAGATATTATGTCTAGCAGAGGTTCAGAACTTGATGGTTCCAACTTTCGTGGGTTCTACACGGTGATTTTGGAGAGGAATGACCAAGTGATTTCTGCTGCCACCATAAGGATTTATGGTCAGAAGGTTGCTGAGCTACCATTTGTTGCCACTGGGAGGATGTTTCGAAGACTTGGAATGTGTAGTATCTTGATGAATGAGCTTGAGAAGCATTTGACTCACTTGGGAATTGAGAGGATGATCTTGCCTTCCTCTCCTAGTGTGATAGACACTTGGACAAACTCATTTGGCTTTGCAAGGATGACAGATTTGGATAAGTCTCAATTTCTTGACTATACTTTTGTAGACTTCCAAGACACCATTATGTGCCACAAATTATTGATGAAGCCTTCAATCAAACGTTTTGATGGTTATGTGGCAACTGGAAGTTCAAGTATTCCTGGGTTTGAGTCAAGTGTGGCTGGAAGTTCAAGTGCTGATGATGCTCAACCATTGCAGCAGCACCAACATGCCAGACTTCAGTGGGAAGCAGAAAATATACAAGATTAG 2193 0.4309 MALSSAPAVSIEPVVCPQAVIEWYKLTGSTDYKRGCRKRDLSLKAKQHLCALGWNLWYIAKQGRWELRYTSPNGRNHISLRSACERCIEEGGCGPENVPLIQKTKGLQVKRDHDHDPSTTAISSSAQPQVQPRKCKKRRARAQSFDDDELDQASSTAVIPSSAQSHEVSRKCKKPRAEPRKCKKPRAEPRKCKKRQRESFDDGDDDEWNPVGQSQSTSELDQASSTAVISSSAQSQEVPRKCKKPRADPRKCKKLRSEPRKCKKLKAEPRKCKKPRVRHGDEAQSSSNPGTVNSWLIDTNVVLSESKVLGPTNFEAHAGCTKQLPSTSIFLEDGRSLLDCQREALSTSQQKNHDVVMQRDSVYKDNNDSVCSICRYGGELILCDRCPSSFHLTCLGLEQVPDGDWFCPPCCCKICNRAKYREDCADNVDCSVLVCDQCEHKYHIGCLKTRGFTSNLENSPNKNWFCNSDCENIFCSLQKLIGKAIPVGGADNLTWMMLKTLKSDNLGDLTSEDLERLSQIESKLSVALGVFRECFDPVIDPLTGRDIISDIMSSRGSELDGSNFRGFYTVILERNDQVISAATIRIYGQKVAELPFVATGRMFRRLGMCSILMNELEKHLTHLGIERMILPSSPSVIDTWTNSFGFARMTDLDKSQFLDYTFVDFQDTIMCHKLLMKPSIKRFDGYVATGSSSIPGFESSVAGSSSADDAQPLQQHQHARLQWEAENIQD 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3071g00005 730 Pfam Tify domain binding domain 307 344 IPR032308 -
Gabi3071g00005 730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 473 IPR013083 -
Gabi3071g00005 730 MobiDBLite consensus disorder prediction 105 291 - -
Gabi3071g00005 730 ProSiteProfiles Zinc finger PHD-type profile. 368 413 IPR019787 -
Gabi3071g00005 730 Gene3D - 529 680 - -
Gabi3071g00005 730 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 509 672 IPR016181 -
Gabi3071g00005 730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 411 IPR013083 -
Gabi3071g00005 730 Pfam Acetyltransferase (GNAT) family 568 646 IPR000182 GO:0016747
Gabi3071g00005 730 PANTHER PHD FINGER PROTEIN 12 15 704 IPR042163 GO:0003714|GO:0045892
Gabi3071g00005 730 MobiDBLite consensus disorder prediction 698 719 - -
Gabi3071g00005 730 MobiDBLite consensus disorder prediction 209 238 - -
Gabi3071g00005 730 SUPERFAMILY FYVE/PHD zinc finger 356 413 IPR011011 -
Gabi3071g00005 730 MobiDBLite consensus disorder prediction 149 166 - -
Gabi3071g00005 730 SMART PHD_3 370 411 IPR001965 -
Gabi3071g00005 730 SMART PHD_3 412 470 IPR001965 -
Gabi3071g00005 730 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 504 681 IPR000182 GO:0016747
Gabi3071g00005 730 Pfam PHD-finger 370 412 IPR019787 -
Gabi3071g00005 730 MobiDBLite consensus disorder prediction 175 191 - -
Gabi3071g00005 730 CDD NAT_SF 570 630 - -
Gabi3071g00005 730 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3071g00005 Gabi-Chr3071 36838 39030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3071g00005 288 623 PHD Transcription Factor Family AT5G58610 41.096 8.51e-82 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3071g00005 Acetyltransf_1 9.4e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3071g00005 - - qsa:O6P43_015988 549.666