Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3069g00029 ATGTCTTTTCCTTCGTGGCTAACTACCCCATCATGTTCCCCTTTGATTATAGATTCATCTTCACCTTCTTCACAACTCTTAGTTCAGTGGTTAAGGTTTATCTTCCTATCTCCATGTCCTCAGAGAGTTCTTCTTTCTGCTGTTGATATCTTCTTCTTGCTCTCCCTTCTAGCCTTTGCAGCTTACAATCTATATTCTCGATTCAGTTCCAATGCTAACTCTGGTTCCTCCATCTCTAAACCCCTTTTGCAAGAGAAGGACTCTGACTACAAAGTTACCTTGTGGTTCAAACTACCCTTGTCGGTAACGATTCTGTTGGCTATAGCTTACACGGTTCTAAGTGTCTTGGCTTTCACTCAAAGTAACCTTGCATCATGGAAACGGATAGAGGCACTGTTTCGCTTTTCTCATGCAATAGTCAACGTAGTGATTGTGATACTAATGCTGCATGAGAAGAAGTTCAAAGCTTCTAAGCACCCTTTGTCGCTTAGAATATACTGGATAGCAAACTTGGTGATTGCTTGCTTGTTTGCTACTTCAGCCATTGTTCGATTGGTAACTGTTGATGAACATAGGTTGGATCTTAATTTGAGAATTGATGACATATTCTCGTTGGTTAATCTTCCATTATCTATGTTCCTTTTCATAATAGCCATCAAAGGGTCATCAGGGATTCGTGTAATCAGAATATGTGATACAGTTGAGAGCTCAAGAACATATCAAAGGCTTTCCATGGATAGGACTTTGAGTCCTTATGCTTATGCTTCCTTGTTATCCAAAACAGTGTGGCTTTGGATGAATCCTCTTCTCAATAAAGGGTACAAAACACCCCTCAAACTTGAAGATGTTCCATCACTTCCTCTTGAATTCCGAGCAGAAAAGATGTCAGAGCTCTTCCAGAGCAATTGGCCAAAGCCAGAGGAAAACAGCAAGCACCCAGTTGGAGTTACCTTGTTTAGGTGCTTCTGGAAACACATAGCTTTCACTGGCTTCCTTGCAGTTATTCGACTTGCGGTTATGTATATTGGTCCAATGCTCATCCAGAGTTTTGTTGACTTCACCTCAAGAAAGGATAGCACTCCCTCTGAAGGTCTTGTTTTGATACTGATCCTGCTTGCAGCAAAATCAGTTGAAGTCCTCAGTGTTCACCAATTCAATTTCCACTCTCAGAAACTAGGCATGCTGATTCGTTCCAGCATCATCACTTCTGTGTACAAGAAGGGCTTGAAATTGTCAAGTTCTTCTAGACAAGCTCATGGGACAGGCCAGGTTGTGAATCACATGGCTGTTGATGCTCAACAACTCTCAGATTTGATGTTGCAGCTTCACCCTATATGGTTGATGCCATTACAAGTTGCTGCTGCATTGGCACTCATCTATTACTATGTTGGTTGGTCTGTGCTTGCAGCACTGCTTGGAACTACCATAGTGTTTATCTTCACTTTGTTTCGCACCAAGAGTAGCAACAGTTTCCAGTTCAGGATAATGATGAACCGTGATTTGAGGATGAAAGCAACCAATGAGTTGCTTAACAACATGCGTGTCATTAAGTTCCAAGCATGGGAGGAGTATTTTGGTAACAAAATTCGACAGTTTAGAGAAGCTGAGCATGGTTGGATTGGGAAATTCTTGTACTATTTTGCTATTAACATGGGAGTTCTGTCCACTGCTCCACTCATGGTAACTGTTCTCACCTTTGGAACTGCAACTTTTCTTGGCATTCCTCTGAATGCTGGCACTGTGTTCACAATAACTTCAGTGATCAAGATATTGCAAGAGCCAGTGAGGACCTTCCCACAAGCTCTTATATTGATTTCTCAAGCAATGATCTCCCTGGGGAGGTTGGATGAGTTCATGACTAGTAAGGAAATGGATGAGAATGCAGTGACTAGAGAGGACAACCGTGACAGTGCCATAGCTGTGGAGATAAAAGATGGGAAATTCTCTTGGGATGATGAGGATGGGAATGAGGCTCTGAAAGTTGAAGAGTTGGAAATTAAGAAAGGGGACCATGCTGCAGTTGTAGGCACTGTTGGGTCAGGCAAGTCTTCTTTATTGGCTTCTGTGTTAGGGGAAATGTTCAAGATCTCAGGAAAGGTCAGAGTTTGTGGGACAATCGCCTATGTAGCACAGACATCATGGATTCAAAATGCAACCATTCAAGAAAACATATTGTTTGGTTTACCAATGAACAGGGAGAAGTACAGGGAAGTAATAAGAGTATGCTGCCTGGAAAAGGATCTTGAAATGATGGAATATGGAGACCAAACTGAGATTGGGGAACGGGGTATTAACCTCAGTGGTGGCCAGAAGCAACGTGTACAACTAGCTAGAGCTGTATACCAAGACTGTGACATCTATCTCCTTGATGATGTATTCAGTGCTGTTGATGCCCAAACAGGATCATTTATATTTAAGGAATGTATCATGGGAGCTCTCAAAGATAAGACCATTTTACTTGTAACTCACCAAGTTGACTTCTTGCATAATGTTGACTCTATAATGGTGATGCGAGATGGGAGAATCGTGCAAAGTGGAAAGTATGATGAACTTCTCAATGCTGGCCTTGATTTTGGTGCACTTGTGGCTGCTCATGAATCATCTATGGAGATTGCAGAAACGAGTGACAAAGGTGTTGGTGATGATTCTGGCCAGTCTCCAAAATTGGCTCGTTTCCCTTCAAAGGAAAAGGAAAACATAGGCGAAAAGCAGCCTCAAGATCAATCTAAATCTGATAAGGCTTCATCAAAGCTCATTGAAGATGAGGAAAGAGAAACTGGCCGTGTGAACCTCAAAGTATATAAACATTATTTCACTGAAGCATTTGGGTGGTGGGGAATAGCACTCATGCTGGCAATGTCTCTAGCATGGATTATATCTTTTTTGGCTGGTGACTACTGGCTAGCAATTGCAACTTCAGAAGATTCTGCAATTCCTTCTTTCACGTTCATTATTGTCTATGCTATCATAGCAGCTATTGCATGTGTTGTGGTGATGGTCCGAGCAATCTTATTTACATATTGGGGTCTAAAGACATCCCAAAGCTTCTTCACTGGAATGCTTCATAGCATCTTGCGTGCACCAATGTCATTCTTTGACACCACTCCTTCTGGCAGAATATTGAGTCGTGTATCTACTGATTTACTTTGGGTTGATATATCAATTCCAATGTTAGTAAGTTTCGTCATGGTTGCATACTTCTCACTAGCCAGCATCCTTATTGTCACATGCCAAAATGCTTGGGAAACGGTCTTCCTATTAATTCCACTGTTTTGGCTGAATAATTGGTATCGGAAATATTACCTTGCATCTTCTAGGGAATTGACTCGCCTTGATTCTATCACAAAAGCTCCTGTGATTCATCACTTTTCAGAGACTATTTCTGGTGTTATGACAATCCGTGGCTTCAGAAAGCAGGGTGCATTTTGTCAGGAGAATATTGACAGGGTCAATGCAAGTCTTAGAATGGATTTCCACAATAATGGAGCCAATGAATGGCTTGGTTTTCGCCTGGACTTTATCGGAGTGGTTTTCCTTTGCGTTGCCACTGTTTTTATGATCTTTTTGCCAAGTGCTATTGTTAGGCCAGAATATGTTGGTTTGTCTCTGTCCTATGGTCTGGCTCTCAGTGGTCTCTTGTCATTTACCATAACCATGACTTGTTCTGTTGAGAACAAAATGGTTTCAGTTGAGAGAATAAAGCAGTTTACCAACCTTCCATCAGAAGCTCCATGGAAAATTGCTGATAAGTCTCCTCCTCAGAATTGGCCCAACCAAGGCAATATCGAGTTAAATAATTTGCAGGTTCGGTATAGGCCAAATACTCCTCTAGTTCTTAAGGGAATATCTCTCAACATTAAAGGAGGAGAAAAGATTGGTGTTGTTGGCCGTACAGGGAGTGGGAAATCAACCCTCATCCAGGTTCTATTTAGGTTGATTGAGCCTTCAGCTGGGAAAATAATCATTGATGGGATCAACATTTGCACTGTGGGCCTTCATGATTTGAGGTCTCGATTTGGAATTATTCCACAAGAACCTGTCCTCTTTCAAGGAACAGTAAGAAGCAACATTGACCCCCTTGGATTGTATTCAGAAGATGAAATCTGGAAGAGCCTTGAACGCTGCCAACTGAAAGAAGTGGTGGCTGCAAAGCCTGAGAAACTTGAGGCTTCAGTGGTTGATGGTGGAGACAATTGGAGTGTGGGACAAAGGCAGCTACTCTGCTTGGGAAGGATCATGCTAAAAAGCACCAAAATACTATTCATGGATGAGGCAACAGCATCTGTTGATTCGCAAACTGATGCTGTGATACAAAAGATCATCAGAGAGGACTTTGCAGATCGCACAATTATCAGTATTGCTCACAGAATACCAACAGTCATGGATTGTGACAAAGTTTTGGTCATAGATGCAGGTTTTGCAAAGGAATTTGACAAGCCATCACGTTTGCTTGAAAGGCATTCGCTATTTGGTGCATTGGTTAAGGAGTATTCCAATAGATCTGCTTAA 4509 0.4181 MSFPSWLTTPSCSPLIIDSSSPSSQLLVQWLRFIFLSPCPQRVLLSAVDIFFLLSLLAFAAYNLYSRFSSNANSGSSISKPLLQEKDSDYKVTLWFKLPLSVTILLAIAYTVLSVLAFTQSNLASWKRIEALFRFSHAIVNVVIVILMLHEKKFKASKHPLSLRIYWIANLVIACLFATSAIVRLVTVDEHRLDLNLRIDDIFSLVNLPLSMFLFIIAIKGSSGIRVIRICDTVESSRTYQRLSMDRTLSPYAYASLLSKTVWLWMNPLLNKGYKTPLKLEDVPSLPLEFRAEKMSELFQSNWPKPEENSKHPVGVTLFRCFWKHIAFTGFLAVIRLAVMYIGPMLIQSFVDFTSRKDSTPSEGLVLILILLAAKSVEVLSVHQFNFHSQKLGMLIRSSIITSVYKKGLKLSSSSRQAHGTGQVVNHMAVDAQQLSDLMLQLHPIWLMPLQVAAALALIYYYVGWSVLAALLGTTIVFIFTLFRTKSSNSFQFRIMMNRDLRMKATNELLNNMRVIKFQAWEEYFGNKIRQFREAEHGWIGKFLYYFAINMGVLSTAPLMVTVLTFGTATFLGIPLNAGTVFTITSVIKILQEPVRTFPQALILISQAMISLGRLDEFMTSKEMDENAVTREDNRDSAIAVEIKDGKFSWDDEDGNEALKVEELEIKKGDHAAVVGTVGSGKSSLLASVLGEMFKISGKVRVCGTIAYVAQTSWIQNATIQENILFGLPMNREKYREVIRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRVQLARAVYQDCDIYLLDDVFSAVDAQTGSFIFKECIMGALKDKTILLVTHQVDFLHNVDSIMVMRDGRIVQSGKYDELLNAGLDFGALVAAHESSMEIAETSDKGVGDDSGQSPKLARFPSKEKENIGEKQPQDQSKSDKASSKLIEDEERETGRVNLKVYKHYFTEAFGWWGIALMLAMSLAWIISFLAGDYWLAIATSEDSAIPSFTFIIVYAIIAAIACVVVMVRAILFTYWGLKTSQSFFTGMLHSILRAPMSFFDTTPSGRILSRVSTDLLWVDISIPMLVSFVMVAYFSLASILIVTCQNAWETVFLLIPLFWLNNWYRKYYLASSRELTRLDSITKAPVIHHFSETISGVMTIRGFRKQGAFCQENIDRVNASLRMDFHNNGANEWLGFRLDFIGVVFLCVATVFMIFLPSAIVRPEYVGLSLSYGLALSGLLSFTITMTCSVENKMVSVERIKQFTNLPSEAPWKIADKSPPQNWPNQGNIELNNLQVRYRPNTPLVLKGISLNIKGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKIIIDGINICTVGLHDLRSRFGIIPQEPVLFQGTVRSNIDPLGLYSEDEIWKSLERCQLKEVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKSTKILFMDEATASVDSQTDAVIQKIIREDFADRTIISIAHRIPTVMDCDKVLVIDAGFAKEFDKPSRLLERHSLFGALVKEYSNRSA 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3069g00029 1502 Pfam ABC transporter 663 792 IPR003439 GO:0005524
Gabi3069g00029 1502 Gene3D - 1245 1495 IPR027417 -
Gabi3069g00029 1502 FunFam ABC transporter C family member 10 310 623 - -
Gabi3069g00029 1502 CDD ABCC_MRP_domain2 1260 1480 - -
Gabi3069g00029 1502 SUPERFAMILY ABC transporter transmembrane region 944 1242 IPR036640 GO:0005524|GO:0016020
Gabi3069g00029 1502 Gene3D - 636 867 IPR027417 -
Gabi3069g00029 1502 FunFam ABC transporter C family member 5 910 1243 - -
Gabi3069g00029 1502 SMART AAA_5 1288 1472 IPR003593 GO:0016887
Gabi3069g00029 1502 SMART AAA_5 668 849 IPR003593 GO:0016887
Gabi3069g00029 1502 Pfam ABC transporter transmembrane region 967 1189 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3069g00029 1502 Pfam ABC transporter transmembrane region 328 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3069g00029 1502 FunFam ABC transporter C family member 4 624 883 - -
Gabi3069g00029 1502 MobiDBLite consensus disorder prediction 891 921 - -
Gabi3069g00029 1502 CDD ABC_6TM_ABCC_D1 328 615 IPR044746 GO:0140359
Gabi3069g00029 1502 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 254 1498 - -
Gabi3069g00029 1502 MobiDBLite consensus disorder prediction 873 921 - -
Gabi3069g00029 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 327 607 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3069g00029 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1262 1496 IPR003439 GO:0005524
Gabi3069g00029 1502 CDD ABC_6TM_ABCC_D2 943 1237 IPR044726 GO:0140359
Gabi3069g00029 1502 Pfam ABC transporter 1279 1427 IPR003439 GO:0005524
Gabi3069g00029 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 860 IPR027417 -
Gabi3069g00029 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1251 1495 IPR027417 -
Gabi3069g00029 1502 FunFam ABC transporter C family member 3 1245 1496 - -
Gabi3069g00029 1502 ProSitePatterns ABC transporters family signature. 766 780 IPR017871 GO:0005524|GO:0016887
Gabi3069g00029 1502 CDD ABCC_MRP_domain1 641 841 - -
Gabi3069g00029 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 641 864 IPR003439 GO:0005524
Gabi3069g00029 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 944 1225 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3069g00029 1502 Gene3D ABC transporter type 1, transmembrane domain 316 624 IPR036640 GO:0005524|GO:0016020
Gabi3069g00029 1502 Gene3D ABC transporter type 1, transmembrane domain 909 1243 IPR036640 GO:0005524|GO:0016020
Gabi3069g00029 1502 SUPERFAMILY ABC transporter transmembrane region 318 623 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3069g00029 Gabi-Chr3069 211127 220826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3069g00029 607 852 Calmodulin-binding Proteins AT2G36910 31.298 2.06e-23 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3069g00029 - K05665 gmx:100804807 2518.04