Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3068g00007 ATGGAAAGGAGAGCAATATGGTCTGTAGCTACCTTTCTTTTCGTATTCCTACAAAGTTTTTGTACTGCCTTATCCACCCACGATTGTCCTGCTTCATCCTGTGGCAATATTCCCAACATAAGTTATCCATTTCGACTCTCTGGTGACCCATCACACTGCGGCAACAAGAGGTACGAACTAGATTGCGAGAACAACGCAACATTTTTAACTCTATTTTCAGGGAAATACCTCGTTCACCACATCAATTACACGGATTACAGTATCAGAGTGAGTGACGCGGGTGTTGTGGAAGACACTACTTGCTCCTTCATCCCCCGTTATTTCTTGTATTCTACCAATTTCAGTGATAATATTAACCGGGGGAGAACAAATCCGCTTATTTTGAGTGCGCTTCACTTACATAGAAGAGCAGCATACTTCAACTGTACCAAACCAATAACTAATGATCGTCGATATGTGAAGGTGGATACAACTCGTTGTGGCACTGGAGGGCACTTCTATGCTGTTCTGATACATGAATATTCATTAGATTTTAATGCGATGGACATCAAGGTTGGGTGCCAATTGAAGGTGGCTTCTTTGGCAAGTTCGAGGACATTGCAAGAAGACCGCCACTTCTATTACAATAAAAACTTTTCCTATGATGAGATCCACAACTTGCTGGCCTATGGATTTTGGCTGTTTTGGGGACATTTTATTTGTGACGAACACTGCGGAAAGGGAAATGATTGCTCGCTTTTGGATGAATCTAGGGTCCGATGTACCCCGCTGCCAAACTGTCGTGATGTTTTCCGGGGATTCATATTCACCAACAGTTGCGGACTTAAGCAATTTTTTGGCGTGAATGATGGTGTGGGCGACGATGGATTTCTAATAGTTGAAATAGTTCAAATAGGAAAAGACACAGGAAGGTATGCCCTACCATACTTTATTGTCAAATTTCTATTAGGTGTGGTAGCTTTCATTATAGTGTTGATCTATAAATGGGGAAGAAGACATACATCAAGCTATGATAATATCGAAGAGTTTTTGGAAGGAAATACCTTCATGCCAATAAGGTACTCATACAAAGAAATAAAGCAGATGACTAGAGGTTTTAAAGAAAAGCTTGGTCAAGGAGGGTTCGGCATGGTGTATAAAGGAAAGCTTCGCAGTGGTCCATTTGTAGCCATAAAGATGTTGAGTAAATCAAAGGCTAACGGGCAAGAATTCATTAGTGAAGTCGCAACTATTGGAATGATACATCATGCCAATGTGGTTCGACTTATTGGATTTTGTGTTGAGGCATCAAAACGTGCTCTTGTTTATGAATTCATGCCCAATGGTTCTCTTGATAGATATATTTTCTCCAAAGCTGATAGTATCTCCTTAACTTACGAGCAAATATATGAAATATCTCTTGGAGTGGCTCGTGGTATTGCTTATCTACATCAAGGATGTGACATGCAAATTTTGCATTTTGATATCAAGCCACATAACATCCTTCTTGATGAGAACTTTGTCCCTAAGGTTTCAGATTTTGGGCTCGCAAAGCTTTATCCTATAGACAAAAGTATTGTTACTTTGACAGCAGCAAGGGGAACAATTGGATACATGGCCCCTGAATTATTCTACCATAATATTGGGGGAATATCATACAAGGCTGATGTCTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGCAGGAGAAAAAACTTGAACAAACAAGCAGAGCATTCAAGTGAACTTTTCTTTCCTCTTTGGATTCATGATCAATTAAGCCGAGAAAATGAGATGGAAATGGAAGATATTACCAATGAAAAGAATAATGAGGCTAAAAAGATGTTCATAGTTGCATTATGGTGTATACAGTTAAAACCAAGTGATCGTCCTTCGATGAACAAAGTAGTAGAGATGCTGGAAGGAGAACTTGAGAACATTGATATGCCACCAAAACCTTCCTTATATCCAGACGAAATGATTCAAGAGGATCTCACAACCAACTCAGACCAAACTCTTTGTGATGATTCTATTGGTTCTACAAGTTATATTGAGTGA 2040 0.3951 MERRAIWSVATFLFVFLQSFCTALSTHDCPASSCGNIPNISYPFRLSGDPSHCGNKRYELDCENNATFLTLFSGKYLVHHINYTDYSIRVSDAGVVEDTTCSFIPRYFLYSTNFSDNINRGRTNPLILSALHLHRRAAYFNCTKPITNDRRYVKVDTTRCGTGGHFYAVLIHEYSLDFNAMDIKVGCQLKVASLASSRTLQEDRHFYYNKNFSYDEIHNLLAYGFWLFWGHFICDEHCGKGNDCSLLDESRVRCTPLPNCRDVFRGFIFTNSCGLKQFFGVNDGVGDDGFLIVEIVQIGKDTGRYALPYFIVKFLLGVVAFIIVLIYKWGRRHTSSYDNIEEFLEGNTFMPIRYSYKEIKQMTRGFKEKLGQGGFGMVYKGKLRSGPFVAIKMLSKSKANGQEFISEVATIGMIHHANVVRLIGFCVEASKRALVYEFMPNGSLDRYIFSKADSISLTYEQIYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFVPKVSDFGLAKLYPIDKSIVTLTAARGTIGYMAPELFYHNIGGISYKADVYSFGMLLMEMASRRKNLNKQAEHSSELFFPLWIHDQLSRENEMEMEDITNEKNNEAKKMFIVALWCIQLKPSDRPSMNKVVEMLEGELENIDMPPKPSLYPDEMIQEDLTTNSDQTLCDDSIGSTSYIE 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3068g00007 679 CDD STKc_IRAK 370 636 - -
Gabi3068g00007 679 PANTHER RUST RESISTANCE KINASE LR10-RELATED 336 654 IPR045874 GO:0004672
Gabi3068g00007 679 Gene3D Phosphorylase Kinase; domain 1 340 438 - -
Gabi3068g00007 679 SUPERFAMILY Protein kinase-like (PK-like) 349 635 IPR011009 -
Gabi3068g00007 679 Coils Coil 584 604 - -
Gabi3068g00007 679 SMART serkin_6 364 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3068g00007 679 FunFam PR5-like receptor kinase 439 646 - -
Gabi3068g00007 679 Pfam Wall-associated receptor kinase galacturonan-binding 29 92 IPR025287 GO:0030247
Gabi3068g00007 679 FunFam serine/threonine-protein kinase PBS1-like 333 438 - -
Gabi3068g00007 679 MobiDBLite consensus disorder prediction 660 679 - -
Gabi3068g00007 679 ProSiteProfiles Protein kinase domain profile. 364 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3068g00007 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Gabi3068g00007 679 Gene3D Transferase(Phosphotransferase) domain 1 439 643 - -
Gabi3068g00007 679 Pfam Protein kinase domain 367 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3068g00007 679 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3068g00007 Gabi-Chr3068 130719 143052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3068g00007 27 676 Receptor kinase-like Gene Family AT5G38260 33.934 2.48e-105 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3068g00007 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3068g00007 - - gmx:100305367 715.687