Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3068g00002 ATGGCTTCTCCTCCACCACCGTTTTCACTTAACGTGGTTGGATCAGACACCTTTCCATCAGTTTCTAGTTCTATTACACCACCAACGGTTCACCGTTCATCTCCGTTACAAAATCTGAGTCCAAGCATTCTTATTATTGTAACGGTCCTCGCCGTTACCGTTATTTTATCCCTAGCACTTTGCTTCCTTCTGCGTCACTTAAACCGCCGTTGCCTCCGCCATATGTCGGCAACCTCCGCCGCCGCAGTCTCTTCATCGGCGACGCCAATTTTCACCTCGAGCCGCCGTATCTCGCCGGAGATACCTCCTTCTTCCTCTTCCGTTATTGACTCTCTCCCTATATTCACTTTCTCCTCCGTCACCCGCCGCTCCTCCACCGCCGCTGCTGACTGCGCCGTGTGCCTCTCCAAGTTCCACCACCACGATCTCCTCCGTCTATTGCCCCTCTGCTGCCATGCTTTTCACGCCGATTGCATTGACACGTGGCTCCGATCCAACCTCTCATGTCCTCTCTGCCGGTCATCCATTGTCGCCGCCGAATCGGAAACCGCTAAGGTTCTCCGATCATCATCCTCCGCCGCGGGAAGCAGCGATAGTTTCCGGCTTGAGATAGGGAACGTGAGCCGACGAGGAACTGAGCCCGTGGCCGCAGCCGGAGGCGTCGGCATCGGCGTTGGCGGTGGCTCGAGGTCGAGGTCGAGGTCGTTTTCCATTGGATCGTTCGAGTATTTGGTGGAAGAGGAATCGGAGGTTCCGTTCAGCCACGCTCACCGGAGAAGTGTATCCGATGAGAAGGATATTCGGTTGCCGGCGGATTCTCCGGCATCTCACGAAGCAGGTCTCGCCGGCGAAGTTGCCGGCGTGAGAAGTTGGCTGAAGGAGTACGTGGATAGGTTCTCAGCTTCTGTATCGTCGCGAACGGCGTCGTTTAGAAGCTCTGGAAGGTTCTTCAGTGGTGGGAGTAGTCGACGAAACGACGTCGTTCCGGTAGGTGAAGAATATGACATGGAAGGTAACCGAATTGGGGAGGAGATTACCGAAATGTTTCGTTGGCTTTCAGGTGTATGA 1068 0.5496 MASPPPPFSLNVVGSDTFPSVSSSITPPTVHRSSPLQNLSPSILIIVTVLAVTVILSLALCFLLRHLNRRCLRHMSATSAAAVSSSATPIFTSSRRISPEIPPSSSSVIDSLPIFTFSSVTRRSSTAAADCAVCLSKFHHHDLLRLLPLCCHAFHADCIDTWLRSNLSCPLCRSSIVAAESETAKVLRSSSSAAGSSDSFRLEIGNVSRRGTEPVAAAGGVGIGVGGGSRSRSRSFSIGSFEYLVEEESEVPFSHAHRRSVSDEKDIRLPADSPASHEAGLAGEVAGVRSWLKEYVDRFSASVSSRTASFRSSGRFFSGGSSRRNDVVPVGEEYDMEGNRIGEEITEMFRWLSGV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3068g00002 355 CDD RING-H2_EL5-like 130 173 - -
Gabi3068g00002 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 178 IPR013083 -
Gabi3068g00002 355 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Gabi3068g00002 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 35 255 - -
Gabi3068g00002 355 SUPERFAMILY RING/U-box 108 178 - -
Gabi3068g00002 355 Pfam Ring finger domain 130 173 IPR001841 -
Gabi3068g00002 355 SMART ring_2 131 172 IPR001841 -
Gabi3068g00002 355 FunFam E3 ubiquitin-protein ligase ATL4 104 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3068g00002 Gabi-Chr3068 25149 26312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3068g00002 20 202 C3H Transcription Factor Family AT4G28890 33.871 9.65e-24 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3068g00002 K10663 - gmx:100817751 402.134