Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3065g00004 ATGTACTATCATCAGCAACAAGCTAAGAACATGCATGCTTCAAGGATGCACACCCCTATTGAGAGGCATATGATCATGCAAGGAGGAAATGGGACTGGTGATTCAGGACTTGTTCTCTCAACTGATGCTAAGCCTAGACTGAAATGGACGCCAGATCTTCATGAACGGTTCATAGAAGCAGTTAATCAACTTGGTGGAGCAGATAAAGCTACACCAAAAACGGTATTGAAACTTATGGGGATTCCTGGACTTACTCTATACCACTTAAAGAGTCATCTACAGAAGTACAGAATCAGTAAAAATATGCATGGACAAACCAGTACTGGTAGCAATAAAAACGCATCAACCACAGAAACAGAAGTCAGAATGTCAGAAGCGAGTGGAATTCAAATGAAACAATTAAGCATAGGACTCCAGACAAACAAAAATTCAGAAATAAATGAGGCGTTACAGATGCAAATTGAAGTGCAAAGAAGACTACATGAGCAGCTGGAGGTACAGCGACACTTACAGCTAAGGATAGAGGCTCAAGGGAAGTACCTTCAGGCAGTGTTGGAAAAAGCTCAAGAAACACTAGGAAGACAAAATTTAGGTAATGTGGGGCTTGAAGATGCCAAGGTTCAACTTTCTGAACTGGCTTCCAGAGTGTCCACTCAATGCCTTGATTCTAAATTTTCAGAACTGAAAGAATTGCAAGTATTGTATCCTCAGCAAACACAAGCAGTTGAAGCCTCTAATTGTTCAATGGGCAGTTTCTTAGCCTACAGTGAGGAATCTCAAAGAGGCCAAGAAAAACATAACAAGGGCCTGAATTTGAAAGCCTATAATGGTACTCCATTTTTAGTTTCAAAAGAGTGTGTGGAAGAGTCTATGCTTTTAAAGTCTGATCTCACCTTGTGTGAAAAAGTGAAGGAGAATATGATGTTTTGCTCCTCATCAAATGATAAAGTAGCAAAAGGAAATTTTTTACCAGAGAGGACATCAAGCCTCTTATCCATGAATGTAGGAGTTCAAGAAGAAGAAAGTTTTGGGAGAACAATTTTTTCAAAGGAAGAAGGGTGTAAAAGAAGAGAAAGTAATGAAAATAGGAGAGTGCCAGTTAAACTAAACCATGAGAAAATTTCTCAAGATTATAGAATGGCTAACTTTGAAGTGAAACTGGACCTGAATGCTCATGATGATAATGATGCTTCTTCCCACTGCCAACAGTTTGACTTGAATGGTTTCAGCTGGAATTGCTAG 1242 0.3929 MYYHQQQAKNMHASRMHTPIERHMIMQGGNGTGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTSTGSNKNASTTETEVRMSEASGIQMKQLSIGLQTNKNSEINEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGNVGLEDAKVQLSELASRVSTQCLDSKFSELKELQVLYPQQTQAVEASNCSMGSFLAYSEESQRGQEKHNKGLNLKAYNGTPFLVSKECVEESMLLKSDLTLCEKVKENMMFCSSSNDKVAKGNFLPERTSSLLSMNVGVQEEESFGRTIFSKEEGCKRRESNENRRVPVKLNHEKISQDYRMANFEVKLDLNAHDDNDASSHCQQFDLNGFSWNC 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3065g00004 413 Pfam MYB-CC type transfactor, LHEQLE motif 145 191 IPR025756 -
Gabi3065g00004 413 SUPERFAMILY Homeodomain-like 43 99 IPR009057 -
Gabi3065g00004 413 Coils Coil 147 167 - -
Gabi3065g00004 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 101 IPR017930 -
Gabi3065g00004 413 NCBIfam myb-like DNA-binding domain, SHAQKYF class 44 99 IPR006447 GO:0003677
Gabi3065g00004 413 MobiDBLite consensus disorder prediction 101 126 - -
Gabi3065g00004 413 FunFam Myb family transcription factor 43 101 - -
Gabi3065g00004 413 Pfam Myb-like DNA-binding domain 46 97 IPR001005 -
Gabi3065g00004 413 Gene3D - 43 101 - -
Gabi3065g00004 413 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 267 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3065g00004 Gabi-Chr3065 20927 24203 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3065g00004 76 412 G2-like Transcription Factor Family AT3G04030 47.929 1.24e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi3065g00004 Myb_DNA-binding 4.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3065g00004 - - gmx:100786282 667.151