Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3065g00003 ATGTACTATCATCAGCAACAAGCTAAGAACATGCATGCTTCAAGGATGCACACCCCTATTGAGAGGCATATGATCATGCAAGGAGGAAATGGGACTGGTGATTCAGGACTTGTTCTCTCAACTGATGCTAAGCCTAGACTGAAATGGACGCCAGATCTTCATGAACGGTTCATAGAAGCAGTTAATCAACTTGGTGGAGCAGATAAAGCTACACCAAAAACGGTATTGAAACTTATGGGGATTCCTGGACTTACTCTATACCACTTAAAGAGTCATCTACAGAAGTACAGAATCAGTAAAAATATGCATGGACAAACCAGTACTGGTAGCAATAAAAACGCATCAACCACAGAAACAGAAGTCAGAATGTCAGAAGCGAGTGGAATTCAAATGAAACAATTAAGCATAGGACTCCAGACAAACAAAAATTCAGAAATAAATGAGGCGTTACAGATGCAAATTGAAGTGCAAAGAAGACTACATGAGCAGCTGGAGCAGGTACAGCGACACTTACAGCTAAGGATAGAGGCTCAAGGGAAGTACCTTCAGGCAGTGTTGGAAAAAGCTCAAGAAACACTAGGAAGACAAAATTTAGGTAATGTGGGGCTTGAAGATGCCAAGGTTCAACTTTCTGAACTGGCTTCCAGAGTGTCCACTCAATGCCTTGATTCTAAATTTTCAGAACTGAAAGAATTGCAAGTATTGTATCCTCAGCAAACACAAGCAGTTGAAGCCTCTAATTGTTCAATGGGCAGTTTCTTAGCCTACAGTGAGGAATCTCAAAGAGGCCAAGAAAAACATAACAAGGGCCTGAATTTGAAAGCCTATAATGGTACTCCATTTTTAGTTTCAAAAGAGTGTGTGGAAGAGTCTATGCTTTTAAAGTCTGATCTCACCTTGTGTGAAAAAGTGAAGGAGAATATGATGTTTTGCTCCTCATCAAATGATAAAGTAGCAAAAGGAAATTTTTTACCAGAGAGGACATCAAGCCTCTTATCCATGAATGTAGGAGTTCAAGAAGAAGAAAGTTTTGGGAGAACAATTTTTTCAAAGGAAGAAGGGTGTAAAAGAAGAGAAAGTAATGAAAATAGGAGAGTGCCAGTTAAACTAAACCATGAGAAAATTTCTCAAGATTATAGAATGGCTAACTTTGAAGTGAAACTGGACCTGAATGCTCATGATGATAATGATGCTTCTTCCCACTGCCAACAGTTTGACTTGAATGGTTTCAGCTGGAATTGCTAG 1245 0.3936 MYYHQQQAKNMHASRMHTPIERHMIMQGGNGTGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTSTGSNKNASTTETEVRMSEASGIQMKQLSIGLQTNKNSEINEALQMQIEVQRRLHEQLEQVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGNVGLEDAKVQLSELASRVSTQCLDSKFSELKELQVLYPQQTQAVEASNCSMGSFLAYSEESQRGQEKHNKGLNLKAYNGTPFLVSKECVEESMLLKSDLTLCEKVKENMMFCSSSNDKVAKGNFLPERTSSLLSMNVGVQEEESFGRTIFSKEEGCKRRESNENRRVPVKLNHEKISQDYRMANFEVKLDLNAHDDNDASSHCQQFDLNGFSWNC 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3065g00003 414 SUPERFAMILY Homeodomain-like 43 99 IPR009057 -
Gabi3065g00003 414 Coils Coil 147 167 - -
Gabi3065g00003 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 101 IPR017930 -
Gabi3065g00003 414 MobiDBLite consensus disorder prediction 101 126 - -
Gabi3065g00003 414 FunFam Myb family transcription factor 43 101 - -
Gabi3065g00003 414 Pfam MYB-CC type transfactor, LHEQLE motif 145 192 IPR025756 -
Gabi3065g00003 414 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 268 IPR044848 GO:0003700
Gabi3065g00003 414 Gene3D - 43 101 - -
Gabi3065g00003 414 NCBIfam myb-like DNA-binding domain, SHAQKYF class 44 99 IPR006447 GO:0003677
Gabi3065g00003 414 Pfam Myb-like DNA-binding domain 46 97 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3065g00003 Gabi-Chr3065 20927 24205 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3065g00003 76 413 G2-like Transcription Factor Family AT3G04030 47.788 9.92e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi3065g00003 Myb_DNA-binding 4.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3065g00003 - - gmx:100786282 673.7