LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi305g00009	ATGCTTAACGGAATTTCCAATCGTTTAAATCAGAAAAAGCTATGGAGAGTTGTGGGATTTATGTCAAGCATCGTTGGACTGCTCTGCTATGCATTGAGCTCCTCTTTCAAACATCTATTTGGAGAGTTGAACTTCCTCAAGATCATCCTTTACACCGTCGTAAGTTTCATAATCAGCAACATGATGTTATTTTTGAAGAAATGGAAACTTTCGAGGAGTTTCTTACAGAAAGCTCATGTGGGTGTTCTTGTTTTGTTGCTCACCTCTTTGTATTCGTTTGAAATTGATAAAGCTGTGAATGGAAAACCAGACCTATTAAGTCTGATTTCGAGTGCAGCCTTTGCTTTAATGTCTTTGTGCCTGTCAAAACAGATTAACCTTGGGTTTGAAACGGATCTCCTCAATTTCTTCCTTGGATGTCTAACTGTTCAACTCATGAAGATAAACTTGATTCTCTGTATCATTACAGCCATATTCAGCTATTCCCTCATGGTTCTTTATTCCAAATTGGGTTCTCAATCAGAGATTGGAACTCTAGAAATGGATAATCATGTGATCGTAGAAATTGATGCTGCAGATGGAGTAGAAAGAGGAGGTGATGACAATAGAAGTAAATTCCAATTTGATCATACCAATGGCAGCCAACAAATTGAGGGGTTAAGAAGAAGGCAAGATGATGGGTACAATTGGAGAAAATATGAAGAGAAACAAGTGAGAAGAAGTGAGAATAAGAGAAGCTACTACAAATGCACATACCCCAATTGCTCTGTGAAGAAAAAAGTTGAAAGAGATGTAAATGGGCAAATTATTGAGATACTCTACGAGGGTACCCATGTCCATTGGAAGCCTGAGCATACAGTGAAGAGGAACTCATCATTTGAATATCTTTATTCACTTCTACCTTCAGAGCCTGTCCTCACTGACATGCCAGATCAATCATTTGCCTCCCATGGCAGTGGACAATTGGATTATGATGCAACATCTGAGAAATCCTCAGTATCAATATGA	1008	0.3849	MLNGISNRLNQKKLWRVVGFMSSIVGLLCYALSSSFKHLFGELNFLKIILYTVVSFIISNMMLFLKKWKLSRSFLQKAHVGVLVLLLTSLYSFEIDKAVNGKPDLLSLISSAAFALMSLCLSKQINLGFETDLLNFFLGCLTVQLMKINLILCIITAIFSYSLMVLYSKLGSQSEIGTLEMDNHVIVEIDAADGVERGGDDNRSKFQFDHTNGSQQIEGLRRRQDDGYNWRKYEEKQVRRSENKRSYYKCTYPNCSVKKKVERDVNGQIIEILYEGTHVHWKPEHTVKRNSSFEYLYSLLPSEPVLTDMPDQSFASHGSGQLDYDATSEKSSVSI	335

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi305g00009	335	SMART	WRKY_cls	224	282	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi305g00009	335	MobiDBLite	consensus disorder prediction	312	335	-	-
	Gabi305g00009	335	ProSiteProfiles	WRKY domain profile.	225	283	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi305g00009	335	Gene3D	WRKY domain	213	284	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi305g00009	335	SUPERFAMILY	WRKY DNA-binding domain	224	283	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi305g00009	335	FunFam	WRKY transcription factor	212	284	-	-
	Gabi305g00009	335	MobiDBLite	consensus disorder prediction	310	335	-	-
	Gabi305g00009	335	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	210	302	IPR044810	GO:0003700
	Gabi305g00009	335	Pfam	WRKY DNA -binding domain	225	280	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi305g00009	Gabi-Chr305	81102	82518	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi305g00009	212	284	WRKY Transcription Factor Family	AT2G38470	61.644	3.09e-25	104

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gabi305g00009		WRKY	4.7e-20	CL0274