Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi305g00006 ATGTCCGCACCATTCCGAAATCTGACAACTCAGGCGAAGTTATGGAGAATAGTGGGATTAGTGTCAAGTGTCATTGGGATGCTGTGTTACGCGTGGAGCCTATCTTCAAAAAATGTGGATGGAAAGTATCACGTTTTGAAGATCTCTCTTTACGGTGTGGTGAGTTTCACAATCATCTGTGTTATGTTATTTGCAAGGAAAGTGCGGTTCTCAAATAATTTCCTGTTGGTAGCTCTTGTGGAAGTTTTTGCTTTGATGCTAACCTCTTTATACAACTTCTTCAGTGATAAAGACTTAGATAAAACACTTGATGTATTTAGCTTAATTTCTAACGGGTCATTTGCTTTGGTGTTATTGAGTATAATGAAGCAAATTGACCTTCCGTTTGAAGCGGAACTGCTTAATTTTTATCTTGGATGTCTTGTGACACAACTCATGAACATCAACTTGGGACTCGTTTTGGTTGGAGCAGCTTACTGTTATTTTCTCAACGTTCTTCGCTCCTATTCAGATATCGAACTAGAGATTGGAACTGCTAGTCATGAAGAGCATGTGGCTATTCAAATTGATACTGGTAAGGGAGAAGAAAGAGAAGCTGACACAGATCACACAAGCCAACTCTATTTGCTTCTGGGAATTGAGATAAAAAATGAGGAGACAGTTATGTATCCTCATGACTTTGAAGCCAAACTTATGGAGGCAATGGCTTCGGGTTTTGTGAAGGAGCACTGCTACCATGTTTTCTGCTGTTGGCGAAGACAAGTCTTGGAGGAGGAGTTGTTGTTAAAGGACCTAAAGAGCATCGAAGAGGTTCACATGATGCCATTGAAACATCTCAAAGATGAAGTTGGACGCTGGATTAAAGCTTCCAAGGATGCTTTCGGGGAATTGTTTCCTAACGAACAACATCTCTGCAATCGTGTCTTTGAGTTCTCTCCTTTTGCTGATCGCTCTTTCATGGAGGTTTGTCATGAACCCAGCATTCTTCTACTGAATTTCTTCGCTAATGCCGTGGCTAGTACAAGCCGTTCACCACAGCGTTTGTTCATAATGCTTTTCGTGTTTGAGACACTGAATGAACTCTTACCTAACTTGGAGTCAATGTTCTCAGGTAAAGAAGGTTGTGTGGTTCTCAATGAGGCAAATAGAATCTGTAAAAGGTTAAGAGAAGCAATAAGAGGAGTTTTCTTGGAGATGGAAAATCTGATTCGTCAAGACCCGGCAAAGGTGGTTGTTTCCGGTGGTGGGCTTCATCCAACTAACCGCTATGTGATGAACTACCTCTTTGTTGCTTGTGATTGTTGGAAGACCCTTGAGCTTGCTTTTAACGATGAAGGGTCACTTCCTTGTTCTTCATTGTCTCTCCAGGTGACTCAAGTTTTGGAGTTGTTGGAGAGCAATTTGAAAGCCAACTCCAAGATCTACAAAGACTCTTCCATGAGCTCTATCTTCATGATGAACAATTGGATGTACATGGTTCACAAGGTGAAAAAGTGTGAGCTAGGAAAAGTGTTGGGTGATGAATGGATCCAGAAACACATAGTGAAAATGCGGCAATATCTTGTACACTACCAGAGAAGCTCATGGGACCAGATACATGGTATGTTGAATATAGACAATAATGAGTCACTGGCACATGATGAATCTGCAGTGTCATGGAAAGAAAAGCTCGAGCTTTTTAAGAGGAAATTTGAGGAGATATGTCTGAATCAGTCTACATGGGTTGTCATTGATGACCACCTAAGAGAAGTCATGAAAAGTTCATTGAAGAAAAACTTGTTGCCGGCGTTTGAAAATTTCATCGCAAGATTCCAAAATGCAATAAATCCTCGAGAAAATATGGATATGCATGAGGAGTTTGGGGCCCAAGGTGTTGCGACTCATATAGACAAGCTGTTCCAGGGAAAAGATGAGCACAGAAACCCCAGAACTATTCAGCCAACATGGAACGTAGTCCTGCGCAGTACACAAGATTTTTATGAATGGAGGAAGTGCGCTGAGAAGACAATCGTTAATTCTTCATACCCAAGATGCATCTGCAGGAATGATCAAGGTTGTCGAGCAAGAAAACACGTCCAACAAATACAAGAGAATCCAAAGCTGTACATGACTAACTACTCCGGCTTCCATACATGCAGTGTGCTCTATATGCTTCACAATGCTCCGTAA 2169 0.4136 MSAPFRNLTTQAKLWRIVGLVSSVIGMLCYAWSLSSKNVDGKYHVLKISLYGVVSFTIICVMLFARKVRFSNNFLLVALVEVFALMLTSLYNFFSDKDLDKTLDVFSLISNGSFALVLLSIMKQIDLPFEAELLNFYLGCLVTQLMNINLGLVLVGAAYCYFLNVLRSYSDIELEIGTASHEEHVAIQIDTGKGEEREADTDHTSQLYLLLGIEIKNEETVMYPHDFEAKLMEAMASGFVKEHCYHVFCCWRRQVLEEELLLKDLKSIEEVHMMPLKHLKDEVGRWIKASKDAFGELFPNEQHLCNRVFEFSPFADRSFMEVCHEPSILLLNFFANAVASTSRSPQRLFIMLFVFETLNELLPNLESMFSGKEGCVVLNEANRICKRLREAIRGVFLEMENLIRQDPAKVVVSGGGLHPTNRYVMNYLFVACDCWKTLELAFNDEGSLPCSSLSLQVTQVLELLESNLKANSKIYKDSSMSSIFMMNNWMYMVHKVKKCELGKVLGDEWIQKHIVKMRQYLVHYQRSSWDQIHGMLNIDNNESLAHDESAVSWKEKLELFKRKFEEICLNQSTWVVIDDHLREVMKSSLKKNLLPAFENFIARFQNAINPRENMDMHEEFGAQGVATHIDKLFQGKDEHRNPRTIQPTWNVVLRSTQDFYEWRKCAEKTIVNSSYPRCICRNDQGCRARKHVQQIQENPKLYMTNYSGFHTCSVLYMLHNAP 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi305g00006 722 SMART WRKY_cls 656 714 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi305g00006 722 PANTHER EXOCYST COMPLEX PROTEIN EXO70 232 634 IPR004140 GO:0000145|GO:0006887
Gabi305g00006 722 Pfam Exo70 exocyst complex subunit 285 606 IPR046364 GO:0000145|GO:0005546|GO:0006887
Gabi305g00006 722 SUPERFAMILY Cullin repeat-like 231 633 IPR016159 -
Gabi305g00006 722 SUPERFAMILY WRKY DNA-binding domain 654 713 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi305g00006 722 Pfam WRKY DNA -binding domain 658 712 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi305g00006 722 Gene3D Exocyst complex component Exo70 200 643 - -
Gabi305g00006 722 Gene3D WRKY domain 648 714 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi305g00006 722 ProSiteProfiles WRKY domain profile. 658 715 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi305g00006 Gabi-Chr305 52713 58360 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi305g00006 235 640 EXO70 exocyst subunit family AT5G58430 49.029 1.47e-119 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi305g00006 Exo70 1e-84 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi305g00006 K07195 - aprc:113848528 960.288