LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3059g00002	ATGTCAATTGCTTGCATTCTACATGACTTGCTGCGTGCGATTGATTACCTACATAGCGAAGGAAAAATTCACAGAGACATTAAAGCTGCTAACATTTTGTTGAGTGAGAATGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAGTTAACAAGGACTATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCACCTGAGGTTATTCAGAATTTAGATGGATATAATGAAAAGGCAGATATCTGGTCTCTGGGGATCACTGCAATTGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCACCCCATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCTCCACAGCTAGATGACCATTTTTCTCGTCCCATGAAAGAATTTGTTTCATTGTGTTTGAAAAAGGTTCCTGCTGAGAGGCCAAGTGCTAAGGAACTTCTCAAAGACCGTTTTATTCGGAATGCTAGGAAGAGTCCAAAGCTTTCAGAAAGAATACGGGGGCGTCCAAAAAACCAAATAAAGGAAGATCTGGGGACACCTAGAAATGGCCCAAGAGGGATAGGGGAGGCATCGGATACCGTGAAGGTGGTGAGAGATTTAAGAGGTGAAGAAACTGATCGACCCAGTGGTCAGGATAAAACCCTGAAAAGCTCTGAATGGGACTTCAGCATTGATGGGTCACAGGGTACTGGAACAGTTCGTAGTGTTTCACGACCACCTCAGTTTAGAGATAAAAAGACTGAAGTTTCACATAATCAGCTTACCCAAAGAAAAGCTCCAGAGAGTGGCTACCGAGGGGGATCTGCCAATAGAAGTGCACTTAATGAGTCACTTGAAAGTTCCTTTGGAAGAAATCTAAGAGTTCCTCACCACGATGAGCATCTGGATACTCACCCTGAAGATGATGAATTGTCTGGTAATGGATTAGGAACTGTTGTTATTCGATCTCCAAAAGGAACAAAACCATCTGTGTATCGTGACCAAAGCTCTCAGTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCCTCGAGTGGAACTGTTGTTTTGCGTACCCAACATGATGATCCTGATTCTCCACAGACACCAAGGTCTCGACTAGGAATTCATGACCGAAATTCAAATTCCTTACTGGAAGATAGTGCTTCAAATCTTGCTGAGGCAAAGGCTGCTATCCAAGGAGGGCTAAGGAAAGTGAATGCTCGAGAGAGATTTTCCCGGGGAAAATCCAACGATATACAGGAAAGCAAGAGAGACCAGATGACTAGCAACTCTGATTCTTCAAGATCATATCGTGATTATGTTGATGCACAAAAGGGCATGTTAAGATCACATTATGCTAGTGATGATGAAGAAAGTGTTAAAATAATGTCATCATCAGTGCCGTTATCAGTTTTGCTTATTCCTTCATTAAAAGAGGCCATTGCGGATGATCCAGAAGGGCCAATCGTACGGGCAGTTATCAATTCTTTCATAAACATGGAGGGAACAAAGCCTAGATCCTGTGATGTTCTTGTCAAAAAGTTGCTTCAGCGGTTGGCAAGTTCACAGGAAGATTCATTAAAGGATCTGCAGGGATTGGCAGGTCAACTATTCAGCCATACCAAGTCAGCTGAAGAAGCCAATAACCAGAAGAAACAACAGAACAAGGAACCTCATCCAAATAGCAATTTAAGCCCACTTGCAAGATTTCTTCTCTCAAGATGGCAAGGCCATACCTCACGGGATCTAAACCCATCTTGA	1758	0.43	MSIACILHDLLRAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNLDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDDHFSRPMKEFVSLCLKKVPAERPSAKELLKDRFIRNARKSPKLSERIRGRPKNQIKEDLGTPRNGPRGIGEASDTVKVVRDLRGEETDRPSGQDKTLKSSEWDFSIDGSQGTGTVRSVSRPPQFRDKKTEVSHNQLTQRKAPESGYRGGSANRSALNESLESSFGRNLRVPHHDEHLDTHPEDDELSGNGLGTVVIRSPKGTKPSVYRDQSSQSSSSYASFEDASSSGTVVLRTQHDDPDSPQTPRSRLGIHDRNSNSLLEDSASNLAEAKAAIQGGLRKVNARERFSRGKSNDIQESKRDQMTSNSDSSRSYRDYVDAQKGMLRSHYASDDEESVKIMSSSVPLSVLLIPSLKEAIADDPEGPIVRAVINSFINMEGTKPRSCDVLVKKLLQRLASSQEDSLKDLQGLAGQLFSHTKSAEEANNQKKQQNKEPHPNSNLSPLARFLLSRWQGHTSRDLNPS	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3059g00002	585	MobiDBLite	consensus disorder prediction	273	287	-	-
	Gabi3059g00002	585	MobiDBLite	consensus disorder prediction	162	379	-	-
	Gabi3059g00002	585	FunFam	Serine/threonine-protein kinase PAK 6	1	177	-	-
	Gabi3059g00002	585	MobiDBLite	consensus disorder prediction	197	219	-	-
	Gabi3059g00002	585	Pfam	Protein kinase domain	6	157	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3059g00002	585	Gene3D	Transferase(Phosphotransferase) domain 1	1	184	-	-
	Gabi3059g00002	585	SMART	serkin_6	1	157	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3059g00002	585	MobiDBLite	consensus disorder prediction	540	567	-	-
	Gabi3059g00002	585	PANTHER	STERILE20-LIKE KINASE, ISOFORM B-RELATED	2	539	-	-
	Gabi3059g00002	585	SUPERFAMILY	Protein kinase-like (PK-like)	3	158	IPR011009	-
	Gabi3059g00002	585	MobiDBLite	consensus disorder prediction	553	567	-	-
	Gabi3059g00002	585	MobiDBLite	consensus disorder prediction	422	436	-	-
	Gabi3059g00002	585	MobiDBLite	consensus disorder prediction	220	242	-	-
	Gabi3059g00002	585	MobiDBLite	consensus disorder prediction	406	421	-	-
	Gabi3059g00002	585	ProSiteProfiles	Protein kinase domain profile.	1	157	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3059g00002	585	MobiDBLite	consensus disorder prediction	406	436	-	-
	Gabi3059g00002	585	MobiDBLite	consensus disorder prediction	290	308	-	-
	Gabi3059g00002	585	MobiDBLite	consensus disorder prediction	327	361	-	-
	Gabi3059g00002	585	MobiDBLite	consensus disorder prediction	162	180	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3059g00002	Gabi-Chr3059	29778	37465	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3059g00002	2	582	MAP Kinase Kinase Kinase Kinase	AT3G15220	59.760	0.0	656

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-YSK	Gabi3059g00002		Pkinase	3.9e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3059g00002	K08838		-	gmx:100815042	942.569