Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3058g00029 ATGGCAACAGCTGAGGCAGCTTCTGCTGGGCTTGGTCCCAGATATGCACCGGAGGATCCTACACTTCCAAAACCATGGAAGGGGTTGATTGATGGGAGCACTGGTTTGTTATACTATTGGAATCCTGAAACCAATGTTACCCAATATGAAAAACCAGCTCCCTCTGGTACCGCACCTGTGCCGGCTCCTACGCCGAGCTTGGCGCCCATACCGGTGGCTCATACAATGCAACCTGGTGGGGTGGTGCAACAGCATGGGCAGCAGTTGCTACAAGTGCAACCTTCACAACAGCAGATGAGTCACCTTGCTCAACAGCACGGGCAATCGATGCCGCAACAGCAGCAGCAGCAGCAGCCGCCCTCTCAGGTTGCTCAATCTGCTCAGCAGCAGAACTTGCAGCCAACGCAGTCAATGCCGCAGCCTGGGTTATATCAAGCAAGGCAGCAAATGATGCAGCCCCAAGGACAGCAAATGATGCAGACCCAAGGACAGCAAATGCATCTTCAGATGCAGCCCCAGGTGAACCTTTCCCAACATTTTGGGCAAGGAGCTTCTCAGGATCATGGCTCACATAATGTACAACCACAATTACATCAATTCACTCCCCAGAACTTGCATTATATGTCGTATAATCAAAACATGGTTCCATCCAGGCAACCAAACTCCCAGCAGATTCAGCCAAACATGCTCTCATCTGGGCAGCAGATTCAGCATAACATACACGGTCAGCCTTTTGAAAATCAACAAGATTTCAAAACAGCATTTCCAAAGATAGAGGAAGCGGAGTTTAAAAATGGAAGCCAAGTTGGACTTTCACCATCCCAGTATCAACAAAGGAGTGCCTTGCCTGTTCAAAACAACCAGAACATTCCTTCGGAAGTCAGTTCTGGTCAAGTGCCTAATGTAGGTGTCAATGCTGGCCAACAGCAACAATTCAGGGGCTTATCGGGCAGTATGCAACAGTCTCCCTCTGCAATGCAGTCGCAACAGGGTGGTTCTGATTTATTTTACCAACATGGTCCTAACTTTCAAAACCAAATGAACCCAGGAATGATGCATGGTCATCCATCCAATGTATATCCTATTGGCCAAAAGATGGGACATGAGGATAATTTACGCGGTAGAGCTGGGAATGAATATTACTATAATTCTAACAAAGAGATGCCGACAATGGGTTCTCAGCAGCCGGATATGACCCAAATACCCATTCCGAGAAATCAGCAGGATATGAGGATAGGCAATGTCCCTTTTCAAAATGTGATGCCTAGTGGAAATGGAAGTGGTATTACTGGAAATGCTGTGCATAACATGTTCACTCCTCCAATAGGAGGACCTTCAGCTCTCCCAAGTAACACTTTGATGAGGCCTCCTTATATTGGATCTTCGGATGTTACTGATCTCTCACCAGCTGAAATTTACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCCCCTTTGATGACATTTGATGCAACTGGATTCCCTCCAGAGATATTGAGGGAGGGTAGAGACATAGTGGCAATTGCCAAAACAGGCTCTGGGAAAACATTAGGCTACTTAATCCCTGCCTTCATTCTTCTTAGACAGCGACATAATAATCCTCTGAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGTGAACTCGCAACACAAATCCAAGATGAGGTCATGAAGTTTGGCCGATCTTCACGTGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAGCTTAAAGAGTTAGATCGGGGAGCGGACATTGTTGTAGCCACACCTGGTCGGCTCAATGATATACTCGAAATGAAGAAAATTAACTTTGGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAAATTGTGAATGAGATTCCACCACGCAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCCAGCGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAGCGTAGATGAGCTTTCTGCAAATAAATCTATCACACAGTATGTTGAAGTTGTCCCACAACTGGAGAAACAGAGGCGCTTGGAGCAGATCCTCAGATCCCAGGAACGTGGTTCTAAGGCCATAATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCCCGTAGTATTGGCCGCAATTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAAAGAGACTGGGTTTTAGGTCAGTTCCGGACCGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCTGCTCGTGGACTTGACATTAAGGATATAAGGGTGGTGATCAACTATGATTTTCCCACTGGAATTGAGGACTATGTACACCGTATAGGAAGAACTGGAAGGGCAGGTGCCACTGGAGTGTCATATACTTTTTTCTCTGAGCAGGACTGGAAACATGCGGGTGATTTGATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCAGAGTTAAGACAGATAGCTTTGCGTGGGGCACCAAACTTTGGAAAGGATCGGGCCGGTGGGATGAGTCGGTTTGACTCTTCTGGTGGTGGTGGTGGTGTTGGTGGCCGTGGTGGCATGAGGGATGGTGGGGGCTTTGGTGGCCGTGGTGGCATGAGGGATGGAGGCTTTGGTGGTCGTGGTGGCATGAGGGATGGAGGCGGCTTTGGTGGTCGTGGTGGTGGCATGAGGGATGGTGGTGGCTTTGGTGGCCGTGGTGGTGGCATGAGGGATGGTGGCTTTGGTGGGCAAGGTGGGAGAGGTGATTTCTTTCCTGGTAGAGGCAACAGGGGTCGAGGATTTGGTGGCCCTCGTGGGGGTCATGTTGGTTGGGGTAGGGGTGATCGTTACAACATTGATGGTCGTGGACGTGGACGTTTTGACAATAGAAGAGATGTTGCTCACAGAAATAGAGGCAGCCCTGAGAGAGTTCGAACATGGGATTATAGCAGAAGTAGAAGCCGGAGCCGTAGCCGCAGCAGAAGTAGGAGCTGGAGCAGGGATCGCAGCAGAAGCCGAAGCCGTAGTTGGTCACGTGGCCGTAGTCGCAGCTATAGCCGCAGTATTAGTCCGCGTCGGAGCCGCAGCCGCAGTCGTAGCCGTGGTCGCAGTGGTCGGAGTTACAGTCGGAGCCAGAGCCGCAGTCGGAGCAACAGCTATGATAGGCGTGATAGGTCAGATGAACAGAAGGATCTTAAGGCACCGGAAGTAGGAGCTTCTGATCCAAGAATGTTTCCTAAATCTCCCAGCGCCCAGGAGAATTCACTTTTGGGAAGTGAACCTGTGGAGCAGCTACCGGTTGGTGGGAGTACTGAACCAGATAAGCCAGAGGCTGTAGTAGACCTTAGTCATCAAGCAGCTTCTGATATTTGA 3432 0.491 MATAEAASAGLGPRYAPEDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAPSGTAPVPAPTPSLAPIPVAHTMQPGGVVQQHGQQLLQVQPSQQQMSHLAQQHGQSMPQQQQQQQPPSQVAQSAQQQNLQPTQSMPQPGLYQARQQMMQPQGQQMMQTQGQQMHLQMQPQVNLSQHFGQGASQDHGSHNVQPQLHQFTPQNLHYMSYNQNMVPSRQPNSQQIQPNMLSSGQQIQHNIHGQPFENQQDFKTAFPKIEEAEFKNGSQVGLSPSQYQQRSALPVQNNQNIPSEVSSGQVPNVGVNAGQQQQFRGLSGSMQQSPSAMQSQQGGSDLFYQHGPNFQNQMNPGMMHGHPSNVYPIGQKMGHEDNLRGRAGNEYYYNSNKEMPTMGSQQPDMTQIPIPRNQQDMRIGNVPFQNVMPSGNGSGITGNAVHNMFTPPIGGPSALPSNTLMRPPYIGSSDVTDLSPAEIYCQQHEVTATGDNIPPPLMTFDATGFPPEILREGRDIVAIAKTGSGKTLGYLIPAFILLRQRHNNPLNGPTVLVLAPTRELATQIQDEVMKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKINFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELSANKSITQYVEVVPQLEKQRRLEQILRSQERGSKAIIFCSTKRLCDQLARSIGRNFGAAAIHGDKSQGERDWVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIALRGAPNFGKDRAGGMSRFDSSGGGGGVGGRGGMRDGGGFGGRGGMRDGGFGGRGGMRDGGGFGGRGGGMRDGGGFGGRGGGMRDGGFGGQGGRGDFFPGRGNRGRGFGGPRGGHVGWGRGDRYNIDGRGRGRFDNRRDVAHRNRGSPERVRTWDYSRSRSRSRSRSRSRSWSRDRSRSRSRSWSRGRSRSYSRSISPRRSRSRSRSRGRSGRSYSRSQSRSRSNSYDRRDRSDEQKDLKAPEVGASDPRMFPKSPSAQENSLLGSEPVEQLPVGGSTEPDKPEAVVDLSHQAASDI 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3058g00029 1143 FunFam ATP-dependent RNA helicase RhlB 678 850 - -
Gabi3058g00029 1143 CDD SF2_C_DEAD 688 817 - -
Gabi3058g00029 1143 MobiDBLite consensus disorder prediction 1029 1057 - -
Gabi3058g00029 1143 SMART ultradead3 486 691 IPR014001 -
Gabi3058g00029 1143 Pfam Helicase conserved C-terminal domain 700 808 IPR001650 -
Gabi3058g00029 1143 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Gabi3058g00029 1143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 540 823 IPR027417 -
Gabi3058g00029 1143 MobiDBLite consensus disorder prediction 928 1143 - -
Gabi3058g00029 1143 Gene3D - 467 678 IPR027417 -
Gabi3058g00029 1143 Gene3D - 17 61 - -
Gabi3058g00029 1143 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 502 847 - -
Gabi3058g00029 1143 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 620 628 IPR000629 -
Gabi3058g00029 1143 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 703 847 IPR001650 -
Gabi3058g00029 1143 MobiDBLite consensus disorder prediction 92 168 - -
Gabi3058g00029 1143 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Gabi3058g00029 1143 SMART helicmild6 724 808 IPR001650 -
Gabi3058g00029 1143 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 500 674 IPR014001 -
Gabi3058g00029 1143 Gene3D - 679 849 IPR027417 -
Gabi3058g00029 1143 SMART ww_5 21 54 IPR001202 GO:0005515
Gabi3058g00029 1143 MobiDBLite consensus disorder prediction 1 27 - -
Gabi3058g00029 1143 Pfam DEAD/DEAH box helicase 501 663 IPR011545 GO:0003676|GO:0005524
Gabi3058g00029 1143 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Gabi3058g00029 1143 MobiDBLite consensus disorder prediction 968 1028 - -
Gabi3058g00029 1143 MobiDBLite consensus disorder prediction 50 73 - -
Gabi3058g00029 1143 MobiDBLite consensus disorder prediction 858 878 - -
Gabi3058g00029 1143 CDD WW 23 54 IPR001202 GO:0005515
Gabi3058g00029 1143 MobiDBLite consensus disorder prediction 1069 1090 - -
Gabi3058g00029 1143 Pfam WW domain 22 52 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3058g00029 Gabi-Chr3058 254419 262014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3058g00029 479 828 Eukaryotic Initiation Factors Gene Family AT3G19760 32.708 2.99e-58 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3058g00029 K12823 - gmx:100807830 1311.98