Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3058g00028 ATGGCAACAGCTGAGGCAGCTTCTGCTGGGCTTGGTCCCAGATATGCACCGGAGGATCCTACACTTCCAAAACCATGGAAGGGGTTGATTGATGGGAGCACTGGTTTGTTATACTATTGGAATCCTGAAACCAATGTTACCCAATATGAAAAACCAGCTCCCTCTGGTACCGCACCTGTGCCGGCTCCTACGCCGAGCTTGGCGCCCATACCGGTGGCTCATACAATGCAACCTGGTGGGGTGGTGCAACAGCATGGGCAGCAGTTGCTACAAGTGCAACCTTCACAACAGCAGATGAGTCACCTTGCTCAACAGCACGGGCAATCGATGCCGCAACAGCAGCAGCAGCAGCAGCCGCCCTCTCAGGTTGCTCAATCTGCTCAGCAGCAGAACTTGCAGCCAACGCAGTCAATGCCGCAGCCTGGGTTATATCAAGCAAGGCAGCAAATGATGCAGCCCCAAGGACAGCAAATGATGCAGACCCAAGGACAGCAAATGCATCTTCAGATGCAGCCCCAGGTGAACCTTTCCCAACATTTTGGGCAAGGAGCTTCTCAGGATCATGGCTCACATAATGTACAACCACAATTACATCAATTCACTCCCCAGAACTTGCATTATATGTCGTATAATCAAAACATGGTTCCATCCAGGCAACCAAACTCCCAGCAGATTCAGCCAAACATGCTCTCATCTGGGCAGCAGATTCAGCATAACATACACGGTCAGCCTTTTGAAAATCAACAAGATTTCAAAACAGCATTTCCAAAGATAGAGGAAGCGGAGTTTAAAAATGGAAGCCAAGTTGGACTTTCACCATCCCAGTATCAACAAAGGAGTGCCTTGCCTGTTCAAAACAACCAGAACATTCCTTCGGAAGTCAGTTCTGGTCAAGTGCCTAATGTAGGTGTCAATGCTGGCCAACAGCAACAATTCAGGGGCTTATCGGGCAGTATGCAACAGTCTCCCTCTGCAATGCAGTCGCAACAGGGTGGTTCTGATTTATTTTACCAACATGGTCCTAACTTTCAAAACCAAATGAACCCAGGAATGATGCATGGTCATCCATCCAATGTATATCCTATTGGCCAAAAGATGGGACATGAGGATAATTTACGCGGTAGAGCTGGGAATGAATATTACTATAATTCTAACAAAGAGATGCCGACAATGGGTTCTCAGCAGCCGGATATGACCCAAATACCCATTCCGAGAAATCAGCAGGATATGAGGATAGGCAATGTCCCTTTTCAAAATGTGATGCCTAGTGGAAATGGAAGTGGTATTACTGGAAATGCTGTGCATAACATGTTCACTCCTCCAATAGGAGGACCTTCAGCTCTCCCAAGTAACACTTTGATGAGGCCTCCTTATATTGGATCTTCGGATGTTACTGATCTCTCACCAGCTGAAATTTACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCCCCTTTGATGACATTTGATGCAACTGGATTCCCTCCAGAGATATTGAGGGAGATATATTCTGCTGGCTTCTCAAATCCAACACCAATACAGGCTCAAACATGGCCTGTTGCAATGCAGGGTAGAGACATAGTGGCAATTGCCAAAACAGGCTCTGGGAAAACATTAGGCTACTTAATCCCTGCCTTCATTCTTCTTAGACAGCGACATAATAATCCTCTGAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGTGAACTCGCAACACAAATCCAAGATGAGGTCATGAAGTTTGGCCGATCTTCACGTGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAGCTTAAAGAGTTAGATCGGGGAGCGGACATTGTTGTAGCCACACCTGGTCGGCTCAATGATATACTCGAAATGAAGAAAATTAACTTTGGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAAATTGTGAATGAGATTCCACCACGCAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCCAGCGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAGCGTAGATGAGCTTTCTGCAAATAAATCTATCACACAGTATGTTGAAGTTGTCCCACAACTGGAGAAACAGAGGCGCTTGGAGCAGATCCTCAGATCCCAGGAACGTGGTTCTAAGGCCATAATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCCCGTAGTATTGGCCGCAATTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAAAGAGACTGGGTTTTAGGTCAGTTCCGGACCGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCTGCTCGTGGACTTGACATTAAGGATATAAGGGTGGTGATCAACTATGATTTTCCCACTGGAATTGAGGACTATGTACACCGTATAGGAAGAACTGGAAGGGCAGGTGCCACTGGAGTGTCATATACTTTTTTCTCTGAGCAGGACTGGAAACATGCGGGTGATTTGATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCAGAGTTAAGACAGATAGCTTTGCGTGGGGCACCAAACTTTGGAAAGGATCGGGCCGGTGGGATGAGTCGGTTTGACTCTTCTGGTGGTGGTGGTGGTGTTGGTGGCCGTGGTGGCATGAGGGATGGTGGGGGCTTTGGTGGCCGTGGTGGCATGAGGGATGGAGGCTTTGGTGGTCGTGGTGGCATGAGGGATGGAGGCGGCTTTGGTGGTCGTGGTGGTGGCATGAGGGATGGTGGTGGCTTTGGTGGCCGTGGTGGTGGCATGAGGGATGGTGGCTTTGGTGGGCAAGGTGGGAGAGGTGATTTCTTTCCTGGTAGAGGCAACAGGGGTCGAGGATTTGGTGGCCCTCGTGGGGGTCATGTTGGTTGGGGTAGGGGTGATCGTTACAACATTGATGGTCGTGGACGTGGACGTTTTGACAATAGAAGAGATGTTGCTCACAGAAATAGAGGCAGCCCTGAGAGAGTTCGAACATGGGATTATAGCAGAAGTAGAAGCCGGAGCCGTAGCCGCAGCAGAAGTAGGAGCTGGAGCAGGGATCGCAGCAGAAGCCGAAGCCGTAGTTGGTCACGTGGCCGTAGTCGCAGCTATAGCCGCAGTATTAGTCCGCGTCGGAGCCGCAGCCGCAGTCGTAGCCGTGGTCGCAGTGGTCGGAGTTACAGTCGGAGCCAGAGCCGCAGTCGGAGCAACAGCTATGATAGGCGTGATAGGTCAGATGAACAGAAGGATCTTAAGGCACCGGAAGTAGGAGCTTCTGATCCAAGAATGTTTCCTAAATCTCCCAGCGCCCAGGAGAATTCACTTTTGGGAAGTGAACCTGTGGAGCAGCTACCGGTTGGTGGGAGTACTGAACCAGATAAGCCAGAGGCTGTAGTAGACCTTAGTCATCAAGCAGCTTCTGATATTTGA 3498 0.49 MATAEAASAGLGPRYAPEDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAPSGTAPVPAPTPSLAPIPVAHTMQPGGVVQQHGQQLLQVQPSQQQMSHLAQQHGQSMPQQQQQQQPPSQVAQSAQQQNLQPTQSMPQPGLYQARQQMMQPQGQQMMQTQGQQMHLQMQPQVNLSQHFGQGASQDHGSHNVQPQLHQFTPQNLHYMSYNQNMVPSRQPNSQQIQPNMLSSGQQIQHNIHGQPFENQQDFKTAFPKIEEAEFKNGSQVGLSPSQYQQRSALPVQNNQNIPSEVSSGQVPNVGVNAGQQQQFRGLSGSMQQSPSAMQSQQGGSDLFYQHGPNFQNQMNPGMMHGHPSNVYPIGQKMGHEDNLRGRAGNEYYYNSNKEMPTMGSQQPDMTQIPIPRNQQDMRIGNVPFQNVMPSGNGSGITGNAVHNMFTPPIGGPSALPSNTLMRPPYIGSSDVTDLSPAEIYCQQHEVTATGDNIPPPLMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVAMQGRDIVAIAKTGSGKTLGYLIPAFILLRQRHNNPLNGPTVLVLAPTRELATQIQDEVMKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKINFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELSANKSITQYVEVVPQLEKQRRLEQILRSQERGSKAIIFCSTKRLCDQLARSIGRNFGAAAIHGDKSQGERDWVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIALRGAPNFGKDRAGGMSRFDSSGGGGGVGGRGGMRDGGGFGGRGGMRDGGFGGRGGMRDGGGFGGRGGGMRDGGGFGGRGGGMRDGGFGGQGGRGDFFPGRGNRGRGFGGPRGGHVGWGRGDRYNIDGRGRGRFDNRRDVAHRNRGSPERVRTWDYSRSRSRSRSRSRSRSWSRDRSRSRSRSWSRGRSRSYSRSISPRRSRSRSRSRGRSGRSYSRSQSRSRSNSYDRRDRSDEQKDLKAPEVGASDPRMFPKSPSAQENSLLGSEPVEQLPVGGSTEPDKPEAVVDLSHQAASDI 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3058g00028 1165 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 522 696 IPR014001 -
Gabi3058g00028 1165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 845 IPR027417 -
Gabi3058g00028 1165 MobiDBLite consensus disorder prediction 1091 1112 - -
Gabi3058g00028 1165 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Gabi3058g00028 1165 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 491 519 IPR014014 GO:0003724
Gabi3058g00028 1165 Pfam DEAD/DEAH box helicase 515 685 IPR011545 GO:0003676|GO:0005524
Gabi3058g00028 1165 FunFam ATP-dependent RNA helicase RhlB 700 872 - -
Gabi3058g00028 1165 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 725 869 IPR001650 -
Gabi3058g00028 1165 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Gabi3058g00028 1165 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 642 650 IPR000629 -
Gabi3058g00028 1165 SMART ultradead3 510 713 IPR014001 -
Gabi3058g00028 1165 MobiDBLite consensus disorder prediction 92 168 - -
Gabi3058g00028 1165 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Gabi3058g00028 1165 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 464 869 - -
Gabi3058g00028 1165 Gene3D - 701 871 IPR027417 -
Gabi3058g00028 1165 Gene3D - 17 61 - -
Gabi3058g00028 1165 MobiDBLite consensus disorder prediction 990 1050 - -
Gabi3058g00028 1165 MobiDBLite consensus disorder prediction 880 900 - -
Gabi3058g00028 1165 Pfam Helicase conserved C-terminal domain 722 830 IPR001650 -
Gabi3058g00028 1165 SMART ww_5 21 54 IPR001202 GO:0005515
Gabi3058g00028 1165 MobiDBLite consensus disorder prediction 1 27 - -
Gabi3058g00028 1165 MobiDBLite consensus disorder prediction 1051 1079 - -
Gabi3058g00028 1165 CDD SF2_C_DEAD 710 839 - -
Gabi3058g00028 1165 MobiDBLite consensus disorder prediction 50 73 - -
Gabi3058g00028 1165 SMART helicmild6 746 830 IPR001650 -
Gabi3058g00028 1165 CDD WW 23 54 IPR001202 GO:0005515
Gabi3058g00028 1165 FunFam probable ATP-dependent RNA helicase DDX17 457 699 - -
Gabi3058g00028 1165 Gene3D - 467 700 IPR027417 -
Gabi3058g00028 1165 MobiDBLite consensus disorder prediction 950 1165 - -
Gabi3058g00028 1165 Pfam WW domain 22 52 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3058g00028 Gabi-Chr3058 254419 262014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3058g00028 479 850 Eukaryotic Initiation Factors Gene Family AT3G19760 34.584 8.49e-67 229