Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3058g00018 ATGGAACAGTATGAGAAGGTTGAGAAGATTGGTGAAGGAACCTACGGTGTCGTTTACAAGGCTCGCGACCGCGTCACCAACGAGACCATTGCGCTCAAAAAAATTCGCCTCGAGCAGGAGGACGAAGGGGTTCCAAGCACCGCCATACGAGAGATTTCGCTCTTGAAGGAAATGCAGCATAGGAACATTCCATTTGCTTATCAAGTTATGCTTTGTGGTTGTGTGGATGGCAGGTTGCAGGATGTAGTGCACAGCGAGAAACGATTGTATCTGGTTTTTGAGTATCTGGACTTAGATCTGAAGAAGCACATGGATTCATCTCCAGAGTTTGCGAAAGATCCACGACAAGTAAAAGTGAGTGTTCTGCAGATATTCCTTTATCAGATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAGTTCTTCATCGAGACTTGAAACCACAAAATTTGTTGATAGATCGCAGCACTAATTCACTTAAGCTTGCAGATTTTGGATTGGCTAGGGCATTTGGCATTCCTGTCAGGACATTTACACATGAGGTGGTGACACTGTGGTACAGAGCTCCAGAAATATTGCTTGGATCTTGTCATTATTCTACCCCAGTTGATATTTGGTCAGTAGGATGTATATTTGCAGAGATGGTAAACAGACGGCCTCTATTCCCTGGAGACTCTGAAATTGATGAATTGTTTAAAATATTCAGAATCTTGGGTACACCAAATGAAGATACATGGCCCGGAGTAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAGTGGCCACCTAAGGACCTAGCAACTGTGGTTCCAAACCTTGAGCCAGCTGGTCTTAATCTCCTTTCTAGTATGCTTTGCTTTGATCCCAGCAAAAGAATTAGCGCCAGGAGCGCTGTCGAGCATGAATACTTCAAAGACATTAAATTTGTACCCTGA 939 0.4334 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIPFAYQVMLCGCVDGRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQVKVSVLQIFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRSTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSCHYSTPVDIWSVGCIFAEMVNRRPLFPGDSEIDELFKIFRILGTPNEDTWPGVTSLPDFKSTFPKWPPKDLATVVPNLEPAGLNLLSSMLCFDPSKRISARSAVEHEYFKDIKFVP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3058g00018 312 Gene3D Phosphorylase Kinase; domain 1 1 97 - -
Gabi3058g00018 312 FunFam Cyclin-dependent kinase 2 (CDK2L) 1 97 - -
Gabi3058g00018 312 FunFam Cell division control protein 2 homolog 99 310 - -
Gabi3058g00018 312 Pfam Protein kinase domain 4 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3058g00018 312 Gene3D Transferase(Phosphotransferase) domain 1 109 310 - -
Gabi3058g00018 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Gabi3058g00018 312 SMART serkin_6 4 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3058g00018 312 ProSiteProfiles Protein kinase domain profile. 4 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3058g00018 312 SUPERFAMILY Protein kinase-like (PK-like) 1 308 IPR011009 -
Gabi3058g00018 312 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gabi3058g00018 312 PANTHER CELL DIVISION PROTEIN KINASE 2 305 - -
Gabi3058g00018 312 CDD STKc_CDK1_CdkB_like 4 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3058g00018 Gabi-Chr3058 161598 168343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3058g00018 1 312 Core Cell Cycle Gene Families AT3G48750 79.487 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Gabi3058g00018 Pkinase 1.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3058g00018 K02206 - gmx:100782865 560.451