Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3058g00016 ATGGACAATTACCAAGGTGATTTAACTGATATATTTCGTGCTAGTGGTGGAGCATATGGTGGCAGTAGCAGCACAGGAACTTCATCATCTGAACCTTCTTCTTCATCATCAGCACCTCATCATAATGATCATTGGCATCACTTTTCTTCTGATCCAATGAATTTCTCTTCTGTTCTTGAAGACCCCATAAGAGGAGGCTACTTTGGTGATCCATTTTCAACTATGAGAGATCCCTTTCTGCAAGAGCTTGATATGCCTATAGCAGCAGGTTCTTCTGCATACTTCAACACCACATCATCATCATCATCAACAACAATAACAACAACAACTCGTGCTGAAATCATCACTACTAGTTCTTCTAGGGGTTTGGAAGATGCAGCAGCATCAGCTTCTGGTTTTGGTGCCAATACTAATAGTAATAATAGCTCTTCTGTTTTTACACACAAGATTCTTGAAGATGACATGAGAATTAGACCAACTACTGTGCCTTGTAGAAACATATTCTCAAGCATGATTCAGATCTCTCCCAATGCAAAGTTACCCCTCTCCCCGTTTGATTCGCCGGCGGCGGCGGTGGTAGCAGCTTCTCCGAGGACAATTAAGCCTTCTTCTGCAATCTCATCTCCACGAAATCCGGGTCTTAAGAGAAGAGTTTGTGTAAATTGCAGGAAGAACCAGGCCAAAAAAGTGGTGTGTATTCCTGCACCAGCAGCTGCAAATAGCAGACAAACAGGAGAGGTAGTTCCTTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGCTATTATAGATGCAGTAGCTCAAAGGGCTGTTCTGCAAGGAAGCAAGTCGAGAGAAGCAGAACAGACCCAAACATGTTGGTTATTACTTACACTTCAGAGCACAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGTTCAACACGATCCCAGCCATCAAAGACAAGTGGTAGTTCTTCAAAGAATTCAGAAACCTCTCATCCTCAAAAGGGAACAACAAAGACAAAGGAAGAGCAGCAAGAGAGTAATAGTGATGGCAATTTGTCCCCAGTTGTTGGTGGGAACTCAGGAAACAGTGTAAAAGAAGAGATGGAAGAGATAGAGAAGCAGCTTGTTGAGAATATGGATGATGGAGAATTCAGTGATGGAATCCCTTACAAGCCATCTATGATGGAGAGTAGTAACCAATTACAATCTGAGGATTTCTTTGCAGAATTGGGAGAAATAGAAGCTGACCCATTAAACCTATTGTTTACTCAAGGCTTTAATGCAAATGATCATGATCAGAGAGAATCCAAGGCCTTGGATCCATTCCATCTATTTGATTGGTCAGAAGAACCTAATAATAACAAGAGAAGGTTATAA 1401 0.4197 MDNYQGDLTDIFRASGGAYGGSSSTGTSSSEPSSSSSAPHHNDHWHHFSSDPMNFSSVLEDPIRGGYFGDPFSTMRDPFLQELDMPIAAGSSAYFNTTSSSSSTTITTTTRAEIITTSSSRGLEDAAASASGFGANTNSNNSSSVFTHKILEDDMRIRPTTVPCRNIFSSMIQISPNAKLPLSPFDSPAAAVVAASPRTIKPSSAISSPRNPGLKRRVCVNCRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKTSGSSSKNSETSHPQKGTTKTKEEQQESNSDGNLSPVVGGNSGNSVKEEMEEIEKQLVENMDDGEFSDGIPYKPSMMESSNQLQSEDFFAELGEIEADPLNLLFTQGFNANDHDQRESKALDPFHLFDWSEEPNNNKRRL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3058g00016 466 ProSiteProfiles WRKY domain profile. 244 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3058g00016 466 MobiDBLite consensus disorder prediction 15 45 - -
Gabi3058g00016 466 MobiDBLite consensus disorder prediction 293 341 - -
Gabi3058g00016 466 SUPERFAMILY WRKY DNA-binding domain 247 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3058g00016 466 MobiDBLite consensus disorder prediction 440 466 - -
Gabi3058g00016 466 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 432 IPR044810 GO:0003700
Gabi3058g00016 466 MobiDBLite consensus disorder prediction 18 39 - -
Gabi3058g00016 466 MobiDBLite consensus disorder prediction 274 375 - -
Gabi3058g00016 466 FunFam probable WRKY transcription factor 14 223 303 - -
Gabi3058g00016 466 SMART WRKY_cls 249 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3058g00016 466 Pfam WRKY DNA -binding domain 251 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3058g00016 466 MobiDBLite consensus disorder prediction 354 368 - -
Gabi3058g00016 466 Gene3D WRKY domain 223 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3058g00016 Gabi-Chr3058 137682 140142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3058g00016 1 432 WRKY Transcription Factor Family AT2G34830 41.432 1.30e-79 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3058g00016 WRKY 2.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3058g00016 - - aprc:113852911 526.168