Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3058g00006 ATGGGTGCTCCTAAGCAGAAGTGGACTGCAGAAGAGGAAGCAGCGCTTAAAGCTGGAGTTGTCAAGCACGGGGTTGGTAAATGGCGTACGATACTCAAGGATCCAGAGTTTAGCAGTGTCTTATATCTGCGGTCGAATGTGGATCTTAAGGATAAGTGGAGAAATCTGAGTGTGATGGCAAATGGATGGAGCTCCAGGGAAAAGTCTAGGTTAGCAGTCAGAAGGGTGCATCAGGCCCCAAAACATGATGAGAACTCTATGGCTGTCACTTCTGTTGTTCCAAGTGATGAAGAAATTGTTGATGTTAAGCCTCTTCAAGTTTCTAGAGATATGGTGCAGATTCCTGGTCCAAAAAGGTCTATCGTAAGATTGGATAACCTTATAATGGAAGCAATAAGTAGCTTGAAGGAGAATGGTGGCTCTAATAAAACAACTATTGCAGCTTTCATAGAGGACCAATACTGGGCACCGCCAGACTTCAAAAGGTTGTTGTCAGCAAAATTAAAATTTTTGACAGCAAGTGGGAAACTGATCAAGGTAAAACGCAGGTATAGGATTGCACCTACTCCAGCATATTCTGACAGAAGAAGAAACTCATCCATGTTGTTAATGGATGGGAGGCAGAAAGCCTCTTTAAAAGTTGACAAGGATGAAACCAACATCCTTACAAAGTCTCAGATAGATATAGAATTAGCAAAGATAAGGTCCATGACTGCACAAGAGGCAGCTGCTGTTGCTGCTCGAGCAGTTGCTGAAGCAGAAGCCGCCATAGCAGAAGCCGAAGAGGCAGCAAGGGAGGCAGAGGCAGCAGAAGCTGATGCAGAGGCAGCACAAGCTTTTGCAGAAGCTGCAATGAAAACACTGAAAGGGAGAAGCACTCCAAAGATGATGATCCATGCTTGA 903 0.4463 MGAPKQKWTAEEEAALKAGVVKHGVGKWRTILKDPEFSSVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLAVRRVHQAPKHDENSMAVTSVVPSDEEIVDVKPLQVSRDMVQIPGPKRSIVRLDNLIMEAISSLKENGGSNKTTIAAFIEDQYWAPPDFKRLLSAKLKFLTASGKLIKVKRRYRIAPTPAYSDRRRNSSMLLMDGRQKASLKVDKDETNILTKSQIDIELAKIRSMTAQEAAAVAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQAFAEAAMKTLKGRSTPKMMIHA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3058g00006 300 SMART sant 4 59 IPR001005 -
Gabi3058g00006 300 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi3058g00006 300 Coils Coil 243 280 - -
Gabi3058g00006 300 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi3058g00006 300 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Gabi3058g00006 300 FunFam Telomere repeat-binding factor 1 8 86 - -
Gabi3058g00006 300 FunFam Telomere repeat-binding factor 1 118 198 - -
Gabi3058g00006 300 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Gabi3058g00006 300 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Gabi3058g00006 300 SUPERFAMILY "Winged helix" DNA-binding domain 117 197 IPR036390 -
Gabi3058g00006 300 FunFam Telomere repeat-binding factor 1 2 58 - -
Gabi3058g00006 300 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi3058g00006 300 Gene3D - 118 197 IPR036388 -
Gabi3058g00006 300 PANTHER SINGLE MYB HISTONE 4 1 295 IPR044597 GO:0003691
Gabi3058g00006 300 CDD SANT_TRF 6 56 - -
Gabi3058g00006 300 Gene3D - 8 87 - -
Gabi3058g00006 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3058g00006 Gabi-Chr3058 40256 46673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3058g00006 1 300 Single Myb Histone (SMH) Gene Family AT1G49950 68.301 6.43e-111 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi3058g00006 Linker_histone 3.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3058g00006 K09422 - gmx:778173 425.246