Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3058g00001 ATGCCAATTGATTACAACCGTTGCCTTGCTATAGAGAAAGTACTAGTGTCACTTCAAACAGCATGCCAAAATGCAACATATGGTTGTAACGAGATAATAAGGTACAACAAGAAATATGAGCATGAGAAGACATGCATCTACCTACCATGTTCATGTCCTCAACTAGGTTGCAACTTTGTTGCCATGTCAAGCAACTTATATCTCCACTTCAACGAAAATCATATGAATGAGGAAATATCATTTAAATATGATGAATTTTTCTGTGTCTTGCTAAGCCGTAATGAGGACACCATTGTTCTTCAAGCGCAAACTGATGGCAAACTATTTGTTCTAAAAAATAAGGTATTTGAGAATCTGGGTAATGCAGTGACTATTTGTCACATTGGACCTAATTCACTATACCCGGTTTCTCATTATGAAATTAAAACAAAGTCTGAGGTGGAAAACAAATTTCTACACTACCGTTCTTCTGCCAAAAACATTCAAGGCCGCACATTTGTCATATCTTCATCAACAAAGTTTCTTTTGATTCCATTGGAATTTTTCAATTCTAATGGAACACTCACACTGGAAATTCGCATAAGTTTATCTCACTTGAAGTTGAAGGCAGTCCATTTGTGTTAG 624 0.3606 MPIDYNRCLAIEKVLVSLQTACQNATYGCNEIIRYNKKYEHEKTCIYLPCSCPQLGCNFVAMSSNLYLHFNENHMNEEISFKYDEFFCVLLSRNEDTIVLQAQTDGKLFVLKNKVFENLGNAVTICHIGPNSLYPVSHYEIKTKSEVENKFLHYRSSAKNIQGRTFVISSSTKFLLIPLEFFNSNGTLTLEIRISLSHLKLKAVHLC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3058g00001 207 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Gabi3058g00001 207 SUPERFAMILY TRAF domain-like 17 195 - -
Gabi3058g00001 207 ProSiteProfiles Zinc finger SIAH-type profile. 17 75 IPR013010 GO:0008270
Gabi3058g00001 207 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 4 196 IPR044286 -
Gabi3058g00001 207 Pfam Seven in absentia protein family 7 192 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gabi3058g00001 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 70 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3058g00001 Gabi-Chr3058 1639 2262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3058g00001 7 74 C3H Transcription Factor Family AT2G41980 37.143 3.27e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3058g00001 K04506 - gmx:100797881 173.326