Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3056g00047 ATGGAGCACAGTTCGGGTTATTCAAAGATATTCTTTTTATTTCTCCTTGGTTCGACTTCCTTCATTTTACTCTCACACTTGGCTTCTGCAGCCACACCTAAGCTCAACTCTGAAGAGGTGAAGGCATTGAAAGAGATAGGGAGGAAAATTGGGAAGAAAGATTGGGACTTTGGGGTGGACCCTTGCAGTGGAAAAGGGATTGATAATAATAGGAAAGGCTTCGAGAGCTCTGTGACGTGTGATTGTTCCTTCAATCACAATTCTTCTTGCCATGTTGTAAGCATATCCTTAAAGGCTCAGAATCTGTCTGTTACTCTCTCACCAGAGTTTTCAAAGCTTCCTTATCTTAAACTATTGGACCTTAGTCGTAACATCATCACTGGTTCTATACCTCAACAATGGGCTACCATGGACTTGGTTGAGATCTCTTTCATGGGAAACAGATTGTCAGGGCAATTCCCCATAGTTCTAACTAATATCACAACCCTCAAAAACCTGAGTATTGAAGGAAATCTATTTTCAGGCTTCATTCCAACAGAGATTGAAAAGTTGATCAATTTGGAAAAACTCATTCTGTCATCAAATGCATTCACAGGAGCATTTCCATCCGCACTTTCCAAGTTGACCAAGTTGACTGATTTGAGGATAAGCGACAATAATTTCTATGGGACAATACCCGATGGCATTAGTAAATGGACATTGATTGAAAAGCTGCACATGCATGGTTGCTCTCTTGAGGGGCCCATACCTTCTAGCATTTCTACCTTGACAAGATTAACCGATTTGAGAATAACTGACCTGAAAGACAATATAAGCTCTGCTTTCCCACCCCTAAGTGATATGAAATCCATGGAGACATTGATATTGAGAAAATGCTTCATTAAAGGAGAGATCCCGGAATATATTGGGAGAATGGAAAAACTAAAAATTTTAGATTTGAGTTTCAATGGCTTGAGTGGAAAGATACCTGGATCTTTTAACCAACTTGACAAAGTGGATTACATGTATCTTACTGGGAACAAGCTAACAGGGACTATACCTGGCTGGGTCCTTGCGACTAACAAAACTGTTGATATCTCTTCCAATAACTTCGCCTGGGATAGCTCAAGTCCAACTGAATGTAAACGAGGGAACGTAAACCTTGTCGAGAGCTACTCCCCATCTGCGGATTCACAAAGTGAGATTGATTCATGCCTAAAAAGAAACTTTCCATGCCCTGCTTCAGTTAGCGACTATCATTCCTCCATGCACATTAATTGTGGTGGTAATGAAGCAAATATTAGTGGTAATACTTATGAAGCTGACAGAGAACAAAAAGGTGCTTCAATGTTATATTACCCTGGTCAGTCTTGGGCTCTTAGTAGCACTGGGAACTTCATGGACAATGATATTGACTCTGATTCCTATATTGCGGTCAATACTTCTAGACTTGATAGTGTCTCAGTACTCAATTCAGAACTGTACACAACAGCTCGTGTTTCTCCGCTTGCTCTCACATATTATGGCCTCTGTCTAGGAAAAGGAAATTACGCCGTTAAGCTTCACTTTGCAGAGATTATTTACATAAATGATACGTCATATAACAGTCTTGGGAGGCGGGTATTTGATGTCTACGTCCAGGGAGAATTGGTGCTGAAAGACTTCGATATCCAAAAGGAAGCTGGTGGTACTGGCAAGCCAATTGTGAAGAGATTCAATGCTACTGTCACACAACATATTTTGAAGATTCACTTTTATTGGGCTGGAAAGGGAACCACTGGCATACCCACAAGAGGAGTTTATGGACCTTTAGTATCTGCTATCGCAGTATACCCAGTATACCCTAATTTTAATCCTCCCTCTCCGGATGATGGCAACAGTACTTTTGTCATACTGGTAGTTTGCATAGTCGGAGGTGTTTTAGTTGTTCTTATGGTGCTAGGTTTCATGTGGGGGATGGGATGGTTAGGAGGCAAGGACCGAGCGTATAAAGAGCTCAAGGGTTTAGATCTGCAAATGGGATTATTTACTTTAAGACAAATCAAAGCAGCAACCAATAACTTTGATGAAGCAAATAAAATTGGCGAAGGTGGCTTTGGTTCTGTTTTCAAGGGACTACTATCAGATGGAACAGTAATTGCGGTAAAGCAGCTCTCTTCAAAATCTAAACAAGGAAACCGTGAGTTTGTGAATGAGATAGGAATGCTATCTGGACTTCAGCATCCTAATCTTGTTAAGCTTTATGGATGTTGTGTGGAGGGAAACCAGCTAATACTGATATATGAGTATATGGAAAATAATTGTCTATCTCGCATTCTTTTTGGAAAGGATCCAAACAGCAGAATGACACTAGACTGGCCAACCAGGAAGAAAATTTGCCTTGGCATAGCTAGAGCTTTGGCTTATCTCCTTGAAGAGTCCAGAATAAAAATCATTCACCGGGATATAAAGACAAGTAATGTCTTGCTCGACAAGGATTTTAATGCTAAAGTATCGGATTTTGGCTTAGCAAAACTTATTGAAGATGACGATACCCATGTTAGCACTCGAATTGCAGGAACAATTGGTTATATGGCTCCTGAGTATGCAATGCATGGCAATTTAACTAACAAAGCAGATGTTTATAGCTTCGGGGTGGTTGCATTAGAAACTGTCAGCGGAAAGAGCAATACAAATCACAGGCCAAACGAGGAATTTGTTTATCTTATTGATTGGGCCTATGATTTGCAAAAGAGAGGAAATCTTCTGGAGCTGGTTGATCCAGGTTTGGGTTCAGAATATCCAACTGAGGAGGTCATGCTGATGCTAAATGTGGCTCTTTTATGTACCAAGGCAATTCCAACACTCAGGCCAACAATGTCTCAAGTTGTGAGCATTCTTGAAGGTTCGACTGACATTCATGATCTACCTCGTGATCAAAACGAGAGTATTCACTCCTGGCAGAATCCAAGCACAGCACAAAACATATAA 2949 0.4066 MEHSSGYSKIFFLFLLGSTSFILLSHLASAATPKLNSEEVKALKEIGRKIGKKDWDFGVDPCSGKGNXDNNRKGFESSVTCDCSFNHNSSCHVVSISLKAQNLSVTLSPEFSKLPYLKLLDLSRNIITGSIPQQWATMDLVEISFMGNRLSGQFPIVLTNITTLKNLSIEGNLFSGFIPTEIEKLINLEKLILSSNAFTGAFPSALSKLTKLTDLRISDNNFYGTIPDGISKWTLIEKLHMHGCSLEGPIPSSISTLTRLTDLRITDLKDNISSAFPPLSDMKSMETLILRKCFIKGEIPEYIGRMEKLKILDLSFNGLSGKIPGSFNQLDKVDYMYLTGNKLTGTIPGWVLATNKTVDISSNNFAWDSSSPTECKRGNVNLVESYSPSADSQSEIDSCLKRNFPCPASVSDYHSSMHINCGGNEANISGNTYEADREQKGASMLYYPGQSWALSSTGNFMDNDIDSDSYIAVNTSRLDSVSVLNSELYTTARVSPLALTYYGLCLGKGNYAVKLHFAEIIYINDTSYNSLGRRVFDVYVQGELVLKDFDIQKEAGGTGKPIVKRFNATVTQHILKIHFYWAGKGTTGIPTRGVYGPLVSAIAVYPVYPNFNPPSPDDGNSTFVILVVCIVGGVLVVLMVLGFMWGMGWLGGKDRAYKELKGLDLQMGLFTLRQIKAATNNFDEANKIGEGGFGSVFKGLLSDGTVIAVKQLSSKSKQGNREFVNEIGMLSGLQHPNLVKLYGCCVEGNQLILIYEYMENNCLSRILFGKDPNSRMTLDWPTRKKICLGIARALAYLLEESRIKIIHRDIKTSNVLLDKDFNAKVSDFGLAKLIEDDDTHVSTRIAGTIGYMAPEYAMHGNLTNKADVYSFGVVALETVSGKSNTNHRPNEEFVYLIDWAYDLQKRGNLLELVDPGLGSEYPTEEVMLMLNVALLCTKAIPTLRPTMSQVVSILEGSTDIHDLPRDQNESIHSWQNPSTAQNI 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3056g00047 983 Gene3D Ribonuclease Inhibitor 266 377 IPR032675 -
Gabi3056g00047 983 Pfam Leucine rich repeat 285 343 IPR001611 GO:0005515
Gabi3056g00047 983 Pfam Leucine rich repeat 163 222 IPR001611 GO:0005515
Gabi3056g00047 983 ProSitePatterns Protein kinases ATP-binding region signature. 688 710 IPR017441 GO:0005524
Gabi3056g00047 983 Gene3D - 414 607 - -
Gabi3056g00047 983 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 651 757 - -
Gabi3056g00047 983 FunFam Putative LRR receptor-like serine/threonine-protein kinase 758 965 - -
Gabi3056g00047 983 MobiDBLite consensus disorder prediction 961 983 - -
Gabi3056g00047 983 Gene3D Transferase(Phosphotransferase) domain 1 758 974 - -
Gabi3056g00047 983 Gene3D Phosphorylase Kinase; domain 1 653 757 - -
Gabi3056g00047 983 Pfam Protein tyrosine and serine/threonine kinase 685 953 IPR001245 GO:0004672|GO:0006468
Gabi3056g00047 983 SUPERFAMILY L domain-like 83 367 - -
Gabi3056g00047 983 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 41 202 - -
Gabi3056g00047 983 SUPERFAMILY Protein kinase-like (PK-like) 665 962 IPR011009 -
Gabi3056g00047 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Gabi3056g00047 983 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 414 607 - -
Gabi3056g00047 983 ProSiteProfiles Protein kinase domain profile. 682 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3056g00047 983 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 22 966 - -
Gabi3056g00047 983 SMART serkin_6 682 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3056g00047 983 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 233 381 - -
Gabi3056g00047 983 MobiDBLite consensus disorder prediction 969 983 - -
Gabi3056g00047 983 Gene3D Ribonuclease Inhibitor 36 265 IPR032675 -
Gabi3056g00047 983 CDD STKc_IRAK 688 956 - -
Gabi3056g00047 983 Pfam Malectin domain 416 602 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3056g00047 Gabi-Chr3056 389586 403093 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3056g00047 53 961 Receptor kinase-like Gene Family AT1G53430 52.083 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3056g00047 PK_Tyr_Ser-Thr 4.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3056g00047 - - gmx:100784864 1506.12